Variant report

Variant	rs8039289
Chromosome Location	chr15:74267329-74267330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11072441	1.00[AMR][1000 genomes]
rs11072442	1.00[AMR][1000 genomes]
rs3910071	1.00[AMR][1000 genomes]
rs8025339	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74265800-74267400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:74265800-74267800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:74265800-74267800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:74265800-74268200	Weak transcription	NHEK	skin
5	chr15:74265800-74268200	Weak transcription	NHLF	lung
6	chr15:74265800-74271600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:74265800-74272600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:74265800-74273800	Weak transcription	Spleen	Spleen
9	chr15:74265800-74273800	Weak transcription	HMEC	breast
10	chr15:74265800-74274000	Weak transcription	Right Ventricle	heart
11	chr15:74265800-74274200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:74265800-74275800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:74266000-74267400	Weak transcription	Dnd41	blood
14	chr15:74266000-74268200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:74266000-74273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:74266400-74268400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:74266600-74268000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:74266800-74267400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:74266800-74268400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr15:74266800-74268600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr15:74267000-74268000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr15:74267000-74268600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr15:74267000-74268800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr15:74267000-74268800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr15:74267000-74269000	Enhancers	Primary hematopoietic stem cells	blood
26	chr15:74267200-74267400	Weak transcription	GM12878-XiMat	blood
27	chr15:74267200-74267600	Weak transcription	Fetal Thymus	thymus
28	chr15:74267200-74268400	Enhancers	Primary T cells from cord blood	blood
29	chr15:74267200-74268600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr15:74267200-74268800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:74267200-74268800	Enhancers	Thymus	Thymus
32	chr15:74267200-74269000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr15:74267200-74277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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