Variant report

Variant	rs8039846
Chromosome Location	chr15:40263765-40263766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40262166..40265065-chr15:40268835..40271155,2	K562	blood:
2	chr15:40261012..40264755-chr15:40266617..40269067,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12050584	0.87[AFR][1000 genomes]
rs2412455	0.87[AFR][1000 genomes]
rs2934195	1.00[AFR][1000 genomes]
rs503775	1.00[AFR][1000 genomes]
rs514394	1.00[AFR][1000 genomes]
rs535400	1.00[AFR][1000 genomes]
rs544070	1.00[AFR][1000 genomes]
rs7173708	0.81[AFR][1000 genomes]
rs7174465	0.81[AFR][1000 genomes]
rs8042413	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40227200-40268400	Weak transcription	Esophagus	oesophagus
2	chr15:40227400-40283400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:40227800-40268400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:40231000-40268400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:40236600-40303000	Weak transcription	Small Intestine	intestine
7	chr15:40238000-40277800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:40238600-40268200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:40238600-40272200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:40238800-40273200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:40240800-40268000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:40241000-40268600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:40241200-40272600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:40248800-40264400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:40249000-40304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:40250000-40294800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:40250200-40299600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:40250800-40265800	Weak transcription	K562	blood
19	chr15:40253000-40273200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:40253000-40273800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:40253200-40273200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:40254000-40268400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:40257000-40263800	Strong transcription	Adipose Nuclei	Adipose
24	chr15:40257200-40264000	Strong transcription	Fetal Lung	lung
25	chr15:40257200-40272200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:40257400-40268600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:40257800-40267800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:40258200-40268600	Weak transcription	Gastric	stomach
29	chr15:40260000-40265200	Weak transcription	Lung	lung
30	chr15:40260200-40265400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:40260200-40265400	Weak transcription	Ovary	ovary
32	chr15:40260200-40268400	Weak transcription	Psoas Muscle	Psoas
33	chr15:40260200-40268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:40260200-40268600	Weak transcription	Pancreas	Pancrea
35	chr15:40260400-40265000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:40260400-40265800	Weak transcription	Spleen	Spleen
37	chr15:40260400-40268200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:40260600-40265000	Weak transcription	HSMMtube	muscle
39	chr15:40260600-40265200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:40260600-40265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:40260600-40266000	Weak transcription	Thymus	Thymus
42	chr15:40260800-40264000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:40260800-40265400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:40260800-40265600	Weak transcription	Brain Substantia Nigra	brain
45	chr15:40260800-40268400	Weak transcription	Brain Angular Gyrus	brain
46	chr15:40260800-40268400	Weak transcription	Brain Germinal Matrix	brain
47	chr15:40260800-40268400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:40260800-40303400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:40261000-40264600	Weak transcription	Fetal Brain Female	brain
50	chr15:40261000-40264600	Weak transcription	Placenta Amnion	Placenta Amnion

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