Variant report

Variant	rs8039950
Chromosome Location	chr15:59604111-59604112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28420968	1.00[AMR][1000 genomes]
rs28488024	1.00[AMR][1000 genomes]
rs74017765	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59593400-59604400	Weak transcription	Adipose Nuclei	Adipose
2	chr15:59594400-59604600	Weak transcription	Primary B cells from cord blood	blood
3	chr15:59594600-59606000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:59596400-59606200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:59596600-59606200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:59597400-59604600	Weak transcription	Spleen	Spleen
7	chr15:59597400-59605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:59597800-59605200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:59598000-59604600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:59598800-59605800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:59599400-59605400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:59599600-59604600	Weak transcription	Aorta	Aorta
13	chr15:59599600-59604600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:59599600-59604600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:59599600-59605400	Weak transcription	Esophagus	oesophagus
16	chr15:59599600-59605400	Weak transcription	Fetal Heart	heart
17	chr15:59599600-59605400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:59599600-59605400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:59599600-59605400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:59599600-59605800	Weak transcription	Colonic Mucosa	Colon
21	chr15:59599600-59605800	Weak transcription	NHLF	lung
22	chr15:59599600-59606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:59599600-59606000	Weak transcription	Gastric	stomach
24	chr15:59599600-59606000	Weak transcription	Ovary	ovary
25	chr15:59599600-59606000	Weak transcription	Right Atrium	heart
26	chr15:59599600-59606200	Weak transcription	Placenta	Placenta
27	chr15:59599800-59604600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:59599800-59604600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:59599800-59604600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:59599800-59604600	Weak transcription	HUVEC	blood vessel
31	chr15:59599800-59605200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:59599800-59605400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:59599800-59605400	Weak transcription	HMEC	breast
34	chr15:59599800-59605400	Weak transcription	HSMM	muscle
35	chr15:59599800-59606200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:59600000-59604800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:59600000-59605400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:59600000-59606000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:59600000-59606200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:59600000-59627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:59601400-59605600	Genic enhancers	A549	lung
42	chr15:59601600-59604400	Genic enhancers	GM12878-XiMat	blood
43	chr15:59602200-59605800	Weak transcription	NHDF-Ad	bronchial
44	chr15:59602400-59604400	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:59602400-59604600	Weak transcription	Brain Substantia Nigra	brain
46	chr15:59602400-59605200	Weak transcription	Small Intestine	intestine
47	chr15:59602400-59605400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:59602400-59605800	Weak transcription	Right Ventricle	heart
49	chr15:59602400-59606000	Weak transcription	Left Ventricle	heart
50	chr15:59602600-59605400	Weak transcription	Duodenum Mucosa	Duodenum

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