Variant report

Variant	rs8040141
Chromosome Location	chr15:83761724-83761725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13379920	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1452116	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1986102	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28711295	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs55751241	0.84[ASN][1000 genomes]
rs56187021	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62010181	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83757600-83763000	Weak transcription	Psoas Muscle	Psoas
2	chr15:83758200-83762800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:83758600-83763400	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:83760000-83763000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:83760600-83762200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:83760800-83762400	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:83760800-83762400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:83760800-83762400	Enhancers	HUVEC	blood vessel
9	chr15:83761000-83762000	Enhancers	Primary B cells from cord blood	blood
10	chr15:83761000-83762000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:83761400-83762000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:83761400-83762600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:83761400-83763400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:83761400-83763800	Enhancers	K562	blood
15	chr15:83761600-83762200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr15:83761600-83763000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:83761600-83763000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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