Variant report

Variant	rs8041650
Chromosome Location	chr15:44342874-44342875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10152607	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10518994	0.81[EUR][1000 genomes]
rs10851415	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10851416	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11070419	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1115870	0.82[AMR][1000 genomes]
rs11632901	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11635948	0.81[EUR][1000 genomes]
rs11638352	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11854312	0.81[EUR][1000 genomes]
rs11857696	0.81[EUR][1000 genomes]
rs12324261	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12437804	0.81[EUR][1000 genomes]
rs12591537	0.81[EUR][1000 genomes]
rs12900880	0.84[EUR][1000 genomes]
rs12913809	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1365456	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1426658	0.84[EUR][1000 genomes]
rs1820482	0.84[EUR][1000 genomes]
rs2042741	0.81[EUR][1000 genomes]
rs2114420	0.81[EUR][1000 genomes]
rs2114421	0.81[EUR][1000 genomes]
rs2412845	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412846	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412847	0.84[EUR][1000 genomes]
rs2412848	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412850	0.81[EUR][1000 genomes]
rs2412851	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412852	0.81[EUR][1000 genomes]
rs2412853	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412854	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412855	0.81[EUR][1000 genomes]
rs2555375	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2555380	0.82[AMR][1000 genomes]
rs2615294	0.82[AMR][1000 genomes]
rs2615297	0.82[AMR][1000 genomes]
rs2623017	0.82[AMR][1000 genomes]
rs2706488	0.81[EUR][1000 genomes]
rs2733221	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28667396	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2899103	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2929281	0.81[EUR][1000 genomes]
rs2930528	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2957583	0.81[EUR][1000 genomes]
rs3919618	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4419034	0.81[EUR][1000 genomes]
rs4923969	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4923972	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4924728	0.84[EUR][1000 genomes]
rs4924729	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4924731	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4924734	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4924735	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4924737	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6493092	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6493093	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6493094	0.84[EUR][1000 genomes]
rs7176955	0.84[EUR][1000 genomes]
rs8033233	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8035212	0.81[EUR][1000 genomes]
rs8036541	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8037441	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8037596	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8038096	0.81[EUR][1000 genomes]
rs8041487	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs890465	0.81[EUR][1000 genomes]
rs958485	0.81[EUR][1000 genomes]
rs9920249	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3331124	chr15:44340909-44367883	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44338200-44344800	Weak transcription	Brain Angular Gyrus	brain
2	chr15:44338800-44344000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:44340200-44344800	Weak transcription	Brain Substantia Nigra	brain
4	chr15:44340400-44344000	Weak transcription	Brain Hippocampus Middle	brain

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