Variant report

Variant	rs8041658
Chromosome Location	chr15:53072335-53072336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16965168	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16965288	1.00[AMR][1000 genomes]
rs28623177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745272	1.00[AMR][1000 genomes]
rs7183326	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv457142	chr15:53041887-53091896	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv569427	chr15:53041887-53091896	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv1046970	chr15:53065114-53142386	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
6	nsv569428	chr15:53069874-53140045	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53059400-53072400	Weak transcription	HepG2	liver
2	chr15:53069800-53073000	Weak transcription	Pancreas	Pancrea
3	chr15:53070600-53073000	Enhancers	Liver	Liver
4	chr15:53071000-53075400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:53071200-53072400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:53071800-53072600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:53071800-53073000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:53072000-53072400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:53072000-53072400	Bivalent Enhancer	A549	lung
10	chr15:53072000-53072800	Enhancers	Primary B cells from peripheral blood	blood
11	chr15:53072000-53073400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:53072000-53073400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
13	chr15:53072200-53072600	Enhancers	Primary B cells from cord blood	blood
14	chr15:53072200-53072600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:53072200-53072600	Flanking Active TSS	GM12878-XiMat	blood
16	chr15:53072200-53072800	Enhancers	Primary hematopoietic stem cells	blood
17	chr15:53072200-53073400	Bivalent Enhancer	Colon Smooth Muscle	Colon
18	chr15:53072200-53073600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links