Variant report

Variant	rs8041889
Chromosome Location	chr15:74827224-74827225
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74822726..74824283-chr15:74826897..74828835,2	MCF-7	breast:
2	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:
3	chr15:74826930..74828545-chr15:74907234..74909524,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11072493	0.85[EUR][1000 genomes]
rs11629946	0.81[EUR][1000 genomes]
rs12437519	0.85[EUR][1000 genomes]
rs7178568	0.85[EUR][1000 genomes]
rs8023479	0.85[EUR][1000 genomes]
rs8040745	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
2	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
3	chr15:74823600-74828000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:74823800-74827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:74824000-74832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74824000-74832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:74824000-74832400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:74824200-74832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:74824400-74827600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:74824400-74827600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:74824400-74827600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:74824400-74831800	Weak transcription	NHLF	lung
13	chr15:74824400-74832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:74824400-74832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:74824600-74827600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:74824600-74827600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:74824600-74827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:74824600-74827600	Weak transcription	Osteobl	bone
19	chr15:74824600-74827800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:74824600-74828000	Weak transcription	NH-A	brain
21	chr15:74824600-74829600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:74824600-74829800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:74824600-74832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:74824600-74832200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:74824600-74832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:74824800-74831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:74824800-74832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:74827000-74827600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:74827000-74829000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:74827200-74827800	Enhancers	NHEK	skin
31	chr15:74827200-74828200	Enhancers	GM12878-XiMat	blood
32	chr15:74827200-74828800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:74827200-74828800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:74827200-74828800	Enhancers	HMEC	breast

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