Variant report
| Variant | rs8042457 |
|---|---|
| Chromosome Location | chr15:45040136-45040137 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000185880 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11853269 | 0.97[ASN][1000 genomes] |
| rs11856066 | 0.90[ASN][1000 genomes] |
| rs17588305 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17589301 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2412919 | 0.91[EUR][1000 genomes] |
| rs2412920 | 0.92[EUR][1000 genomes] |
| rs28812298 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3759880 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3759882 | 0.97[ASN][1000 genomes] |
| rs3759883 | 0.97[ASN][1000 genomes] |
| rs3759884 | 0.97[ASN][1000 genomes] |
| rs7164679 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7166053 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7166101 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7167254 | 0.97[ASN][1000 genomes] |
| rs7175030 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7182487 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758380 | chr15:44968868-45422842 | Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
| 2 | esv2760029 | chr15:44968868-45422842 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
| 3 | nsv832990 | chr15:44990765-45162714 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:8)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs8042457 | TRIM69 | cis | Muscle Skeletal | GTEx |
| rs8042457 | TRIM69 | cis | Artery Tibial | GTEx |
| rs8042457 | TRIM69 | cis | Thyroid | GTEx |
| rs8042457 | TRIM69 | cis | Esophagus Muscularis | GTEx |
| rs8042457 | TRIM69 | cis | brain | BrainEAC |
| rs8042457 | TRIM69 | cis | Adipose Subcutaneous | GTEx |
| rs8042457 | TRIM69 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs8042457 | TRIM69 | cis | Nerve Tibial | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
