Variant report

Variant	rs8046044
Chromosome Location	chr16:71870208-71870209
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71828963..71831698-chr16:71869677..71872255,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10500567	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852507	0.87[EUR][1000 genomes]
rs11075906	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11640135	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11865456	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12149307	0.85[EUR][1000 genomes]
rs12149325	0.85[EUR][1000 genomes]
rs12149917	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12445564	0.94[EUR][1000 genomes]
rs12445641	0.85[EUR][1000 genomes]
rs12448086	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12921279	0.89[EUR][1000 genomes]
rs12921459	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12927691	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12934512	0.86[EUR][1000 genomes]
rs13330178	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17357420	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17358402	0.85[EUR][1000 genomes]
rs28667298	0.86[ASN][1000 genomes]
rs2878494	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3088285	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34029919	0.90[EUR][1000 genomes]
rs34664834	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35028754	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35209006	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35404791	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35535529	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35595148	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751820	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4528577	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71384781	0.89[EUR][1000 genomes]
rs71384782	0.86[EUR][1000 genomes]
rs71386939	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71386940	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7185027	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7188591	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7191848	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7195988	0.90[EUR][1000 genomes]
rs7197486	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7198834	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7200447	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73586164	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8049508	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8050058	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8052358	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8053906	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8063657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9940234	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71868600-71876400	Weak transcription	Fetal Kidney	kidney
2	chr16:71870000-71874000	Weak transcription	HepG2	liver
3	chr16:71870200-71871400	Enhancers	HMEC	breast

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