Variant report

Variant	rs8046284
Chromosome Location	chr16:65263350-65263351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12920405	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs60433997	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73590078	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs961504	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525526	chr16:65257891-65308021	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv906776	chr16:65257891-65315175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65257600-65265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:65261600-65269800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:65262000-65263400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
4	chr16:65262200-65264600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
5	chr16:65262600-65263600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr16:65262600-65263600	Enhancers	HSMMtube	muscle
7	chr16:65262600-65264600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
8	chr16:65262800-65263600	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
9	chr16:65263000-65263400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr16:65263000-65263600	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
11	chr16:65263000-65263600	Genic enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr16:65263000-65263600	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
13	chr16:65263000-65263600	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr16:65263000-65263800	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
15	chr16:65263000-65263800	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
16	chr16:65263200-65263400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr16:65263200-65263600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
18	chr16:65263200-65266200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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