Variant report

Variant	rs804760
Chromosome Location	chr5:151388165-151388166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs255469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255521	0.81[EUR][1000 genomes]
rs255522	0.82[EUR][1000 genomes]
rs255523	0.82[EUR][1000 genomes]
rs255526	0.81[EUR][1000 genomes]
rs804770	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020223	chr5:151383539-151417923	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151384000-151388400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:151386400-151388800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:151386600-151388400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:151387000-151388600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:151387200-151388200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:151387400-151388200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:151387400-151388400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links