Variant report

Variant	rs804829
Chromosome Location	chr6:37608976-37608977
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr6:37608542-37609032	A549	lung:	n/a	chr6:37608700-37608726 chr6:37608823-37608839 chr6:37608706-37608720 chr6:37608700-37608726 chr6:37608700-37608726 chr6:37608625-37608638 chr6:37608706-37608720 chr6:37608700-37608726
2	NR3C1	chr6:37608610-37609031	A549	lung:	n/a	chr6:37608700-37608726 chr6:37608823-37608839 chr6:37608706-37608720 chr6:37608700-37608726 chr6:37608700-37608726 chr6:37608625-37608638 chr6:37608706-37608720 chr6:37608700-37608726

No.	Distal block	Cell Line	Cell type
1	chr6:37465289..37468195-chr6:37607347..37609837,2	K562	blood:
2	chr6:37606812..37609273-chr6:37613389..37615459,2	MCF-7	breast:
3	chr6:37548466..37548999-chr6:37608361..37609178,2	MCF-7	breast:

Variant related genes	Relation type
MDGA1	TF binding region
ENSG00000112139	Chromatin interaction
ENSG00000198937	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3905219	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37594000-37615400	Weak transcription	Fetal Brain Female	brain
2	chr6:37599200-37615600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:37599200-37621800	Weak transcription	NHLF	lung
4	chr6:37600400-37611400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:37602200-37616600	Weak transcription	Right Atrium	heart
6	chr6:37602600-37610000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:37602800-37616400	Weak transcription	Ovary	ovary
8	chr6:37604000-37610000	Weak transcription	Fetal Brain Male	brain
9	chr6:37604000-37611800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:37604200-37614600	Strong transcription	Fetal Stomach	stomach
11	chr6:37604400-37611600	Weak transcription	Small Intestine	intestine
12	chr6:37605000-37611600	Weak transcription	Gastric	stomach
13	chr6:37605400-37609000	Weak transcription	Spleen	Spleen
14	chr6:37606200-37609200	Enhancers	Esophagus	oesophagus
15	chr6:37606800-37611800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:37606800-37615600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:37607000-37611600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:37607000-37611800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:37607200-37611200	Weak transcription	A549	lung
20	chr6:37607200-37611400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:37607400-37610600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:37607400-37611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:37607400-37611600	Weak transcription	HMEC	breast
24	chr6:37607600-37611400	Weak transcription	Hela-S3	cervix
25	chr6:37608000-37609200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:37608000-37610400	Weak transcription	K562	blood
27	chr6:37608600-37609400	Enhancers	Primary T cells fromperipheralblood	blood

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