Variant report

Variant	rs8051009
Chromosome Location	chr16:81459415-81459416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2608566	0.83[EUR][1000 genomes]
rs6564881	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8044853	0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923449	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81453000-81462800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:81455600-81465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:81457800-81459600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr16:81458800-81462400	Weak transcription	HepG2	liver
5	chr16:81458800-81462600	Weak transcription	Fetal Thymus	thymus
6	chr16:81458800-81462800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr16:81458800-81465400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:81459000-81462800	Weak transcription	Dnd41	blood
9	chr16:81459200-81462400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr16:81459200-81462600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr16:81459200-81462600	Weak transcription	A549	lung
12	chr16:81459200-81462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr16:81459200-81465200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr16:81459400-81462800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr16:81459400-81465200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr16:81459400-81465600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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