Variant report

Variant	rs8053021
Chromosome Location	chr16:81944804-81944805
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1143689	0.86[ASN][1000 genomes]
rs11641776	0.85[ASN][1000 genomes]
rs12448130	0.81[AFR][1000 genomes]
rs4305012	0.85[EUR][1000 genomes]
rs4306503	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4494532	0.85[ASN][1000 genomes]
rs4520827	0.83[EUR][1000 genomes]
rs4627340	0.83[EUR][1000 genomes]
rs4888186	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81902800-81955600	Weak transcription	Fetal Kidney	kidney
2	chr16:81908400-81950000	Strong transcription	GM12878-XiMat	blood
3	chr16:81908400-81950200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr16:81909400-81961800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr16:81920400-81982000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr16:81924400-81946200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:81924400-81961600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:81924400-81970000	Weak transcription	Fetal Intestine Large	intestine
9	chr16:81924800-81949200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr16:81925400-81949200	Weak transcription	Right Ventricle	heart
11	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:81928000-81953200	Weak transcription	Fetal Thymus	thymus
13	chr16:81930800-81953400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr16:81931000-81949800	Strong transcription	Liver	Liver
15	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr16:81934600-81961200	Weak transcription	Colonic Mucosa	Colon
17	chr16:81934800-81945000	Weak transcription	Thymus	Thymus
18	chr16:81934800-81971600	Weak transcription	Right Atrium	heart
19	chr16:81935000-81953000	Weak transcription	Adipose Nuclei	Adipose
20	chr16:81936000-81982000	Weak transcription	Gastric	stomach
21	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr16:81936400-81949400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr16:81936800-81949400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:81936800-81951000	Strong transcription	Primary B cells from cord blood	blood
25	chr16:81937000-81969800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr16:81937200-81955000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:81938200-81946200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr16:81938600-81946400	Weak transcription	Pancreas	Pancrea
29	chr16:81941600-81966000	Weak transcription	Placenta	Placenta
30	chr16:81941800-81946200	Weak transcription	Fetal Intestine Small	intestine
31	chr16:81941800-81947000	Weak transcription	Fetal Stomach	stomach
32	chr16:81942000-81948000	Weak transcription	Esophagus	oesophagus
33	chr16:81942400-81946000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr16:81943600-81946400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr16:81944200-81946200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr16:81944400-81946000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr16:81944400-81946200	Weak transcription	Lung	lung
38	chr16:81944600-81946000	Weak transcription	Spleen	Spleen
39	chr16:81944800-81945600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr16:81944800-81946200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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