Variant report

Variant	rs8053849
Chromosome Location	chr16:81756520-81756521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81436877..81437744-chr16:81756436..81757351,2	MCF-7	breast:
2	chr16:81437026..81437873-chr16:81756418..81757211,6	MCF-7	breast:
3	chr16:81399376..81400535-chr16:81756173..81757335,5	MCF-7	breast:
4	chr16:81436892..81437783-chr16:81756412..81757414,9	K562	blood:
5	chr16:81656804..81657584-chr16:81756494..81757328,3	MCF-7	breast:
6	chr16:81755509..81757208-chr16:81760399..81763317,2	K562	blood:
7	chr16:81755538..81758445-chr16:81766898..81768515,2	MCF-7	breast:
8	chr16:81439090..81439698-chr16:81756398..81757088,2	MCF-7	breast:
9	chr16:81068946..81069741-chr16:81756414..81757405,2	MCF-7	breast:
10	chr16:81656689..81657762-chr16:81756428..81757375,8	MCF-7	breast:
11	chr16:81756479..81757262-chr16:81766086..81766816,2	MCF-7	breast:
12	chr16:81756457..81756994-chr16:81771377..81772257,2	MCF-7	breast:
13	chr16:81656799..81657596-chr16:81756411..81756949,2	K562	blood:
14	chr16:81659547..81660132-chr16:81756400..81757352,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73589244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81749800-81763200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:81750400-81764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:81751800-81763600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr16:81752800-81763600	Weak transcription	HUVEC	blood vessel
5	chr16:81753000-81758000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr16:81753000-81762800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr16:81753400-81756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:81753600-81757000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr16:81753600-81761000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:81753800-81756800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:81754400-81760800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr16:81754800-81760600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:81756000-81757200	Enhancers	A549	lung
14	chr16:81756400-81756600	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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