Variant report

Variant	rs8054101
Chromosome Location	chr16:79829210-79829211
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34646263	1.00[AMR][1000 genomes]
rs35586774	1.00[AMR][1000 genomes]
rs4309414	1.00[AMR][1000 genomes]
rs4614735	1.00[AMR][1000 genomes]
rs4889040	1.00[AMR][1000 genomes]
rs6564705	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79814000-79839600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:79823600-79829800	Weak transcription	Esophagus	oesophagus
3	chr16:79824200-79829400	Enhancers	Fetal Stomach	stomach
4	chr16:79827000-79829600	Enhancers	Ovary	ovary
5	chr16:79827600-79830800	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:79827600-79831200	Enhancers	Fetal Lung	lung
7	chr16:79827800-79830000	Enhancers	NHEK	skin
8	chr16:79828000-79829600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:79829000-79829400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:79829000-79829400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr16:79829000-79829600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr16:79829000-79830000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:79829200-79829600	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links