Variant report

Variant	rs8055655
Chromosome Location	chr16:71933091-71933092
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:71932963-71933310	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71931575..71934137-chr16:71950822..71953492,2	MCF-7	breast:
2	chr16:71878320..71880402-chr16:71929242..71933378,4	MCF-7	breast:
3	chr16:71931560..71934913-chr16:71937416..71939939,3	K562	blood:
4	chr16:71933089..71936060-chr16:71938711..71940740,2	MCF-7	breast:
5	chr16:71932998..71934672-chr16:71946050..71948887,2	K562	blood:
6	chr16:71926844..71931687-chr16:71933054..71938868,11	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF821	TF binding region
ENSG00000224470	Chromatin interaction
ENSG00000182149	Chromatin interaction
ENSG00000102984	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11075910	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv1056439	chr16:71916498-72051144	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1055854	chr16:71922144-72082886	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv906893	chr16:71922663-71988728	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
6	esv3369163	chr16:71932875-71933152	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71930400-71934800	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr16:71930600-71934200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:71930800-71933400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr16:71930800-71933600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:71930800-71934000	Enhancers	Ovary	ovary
6	chr16:71930800-71934400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr16:71930800-71934800	Enhancers	Small Intestine	intestine
8	chr16:71930800-71935400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr16:71930800-71935400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr16:71930800-71943200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:71930800-71944200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr16:71930800-71950000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:71930800-71951800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr16:71931000-71934000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr16:71931000-71934600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr16:71931000-71934600	Enhancers	Colon Smooth Muscle	Colon
17	chr16:71931000-71937000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr16:71931000-71937800	Enhancers	Primary B cells from peripheral blood	blood
19	chr16:71931000-71942800	Weak transcription	Fetal Heart	heart
20	chr16:71931000-71949400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:71931000-71949600	Weak transcription	NHEK	skin
22	chr16:71931200-71933200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr16:71931200-71933200	Weak transcription	Fetal Muscle Leg	muscle
24	chr16:71931200-71933200	Weak transcription	Placenta	Placenta
25	chr16:71931200-71933600	Strong transcription	Fetal Intestine Small	intestine
26	chr16:71931200-71933600	Strong transcription	Fetal Stomach	stomach
27	chr16:71931200-71934000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr16:71931200-71934000	Enhancers	Left Ventricle	heart
29	chr16:71931200-71934000	Weak transcription	Psoas Muscle	Psoas
30	chr16:71931200-71934000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr16:71931200-71934000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr16:71931200-71934000	Weak transcription	NHLF	lung
33	chr16:71931200-71934200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr16:71931200-71934200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr16:71931200-71934400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr16:71931200-71934600	Enhancers	Brain Hippocampus Middle	brain
37	chr16:71931200-71934800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:71931200-71935000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:71931200-71935600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr16:71931200-71935800	Weak transcription	NH-A	brain
41	chr16:71931200-71936600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr16:71931200-71936800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr16:71931200-71936800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr16:71931200-71936800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr16:71931200-71937000	Weak transcription	Brain Germinal Matrix	brain
46	chr16:71931200-71938200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr16:71931200-71940600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr16:71931200-71942800	Weak transcription	HSMM	muscle
49	chr16:71931200-71943000	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr16:71931200-71943000	Weak transcription	Fetal Lung	lung

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