Variant report

Variant	rs8055721
Chromosome Location	chr16:80803117-80803118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10445094	0.81[CHB][hapmap]
rs10871396	0.84[TSI][hapmap]
rs11150312	0.91[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1981869	0.82[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28377915	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28497840	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7198155	0.89[AMR][1000 genomes]
rs7202292	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9921063	0.87[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9928624	0.92[AMR][1000 genomes]
rs9929786	0.82[EUR][1000 genomes]
rs9937691	0.89[GIH][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542990	chr16:80729797-80918198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv833301	chr16:80732170-80928751	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1851516	chr16:80766198-80813696	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv573301	chr16:80800656-80818676	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8055721	EVI2A	trans	brain	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80794200-80803400	Weak transcription	HUVEC	blood vessel
2	chr16:80802000-80806200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:80802200-80803200	Strong transcription	Hela-S3	cervix
4	chr16:80803000-80803600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr16:80803000-80803600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr16:80803000-80803600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr16:80803000-80803600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr16:80803000-80803800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr16:80803000-80803800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr16:80803000-80804000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:80803000-80804000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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