Variant report

Variant	rs8056805
Chromosome Location	chr16:79806605-79806606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79806235..79808248-chr16:79862805..79864762,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11860057	0.81[ASN][1000 genomes]
rs13334268	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16951260	0.85[EUR][1000 genomes]
rs16951261	0.85[EUR][1000 genomes]
rs16951264	0.85[EUR][1000 genomes]
rs16951284	0.86[EUR][1000 genomes]
rs16951299	0.85[EUR][1000 genomes]
rs16951301	0.84[EUR][1000 genomes]
rs16951302	0.85[EUR][1000 genomes]
rs16951303	0.86[EUR][1000 genomes]
rs16951310	0.86[EUR][1000 genomes]
rs16951318	0.86[EUR][1000 genomes]
rs16951320	0.86[EUR][1000 genomes]
rs28420623	0.85[EUR][1000 genomes]
rs28433357	0.85[EUR][1000 genomes]
rs28691811	0.85[EUR][1000 genomes]
rs4243180	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4257219	0.84[EUR][1000 genomes]
rs4316769	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4322684	0.86[EUR][1000 genomes]
rs4327063	0.86[EUR][1000 genomes]
rs4411509	0.84[EUR][1000 genomes]
rs4474702	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4632145	0.86[EUR][1000 genomes]
rs4889026	0.87[ASN][1000 genomes]
rs56986701	0.86[EUR][1000 genomes]
rs59100419	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6564699	0.85[EUR][1000 genomes]
rs6564700	0.86[EUR][1000 genomes]
rs6564701	0.86[EUR][1000 genomes]
rs66616635	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7188433	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7190298	0.85[EUR][1000 genomes]
rs7191995	0.86[EUR][1000 genomes]
rs7200600	0.86[EUR][1000 genomes]
rs7202532	0.88[ASN][1000 genomes]
rs72810418	0.85[EUR][1000 genomes]
rs72810426	0.86[EUR][1000 genomes]
rs72810440	0.86[EUR][1000 genomes]
rs73572226	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7499783	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8045678	0.86[EUR][1000 genomes]
rs8057344	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8060038	0.88[EUR][1000 genomes]
rs8061610	0.86[EUR][1000 genomes]
rs9673947	0.85[EUR][1000 genomes]
rs9921624	0.86[EUR][1000 genomes]
rs9923844	0.86[EUR][1000 genomes]
rs9926635	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2755409	chr16:79776699-79816299	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8056805	RP11-345M22.1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79805000-79807400	Enhancers	Fetal Intestine Small	intestine
2	chr16:79805000-79807800	Enhancers	Fetal Intestine Large	intestine
3	chr16:79805000-79808800	Weak transcription	Esophagus	oesophagus
4	chr16:79805000-79809200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:79805000-79809400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:79805000-79810400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:79805200-79806800	Enhancers	Colon Smooth Muscle	Colon
8	chr16:79805200-79806800	Enhancers	Duodenum Mucosa	Duodenum
9	chr16:79805200-79807000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr16:79805200-79807000	Enhancers	Small Intestine	intestine
11	chr16:79805200-79808600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr16:79805200-79809000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:79805200-79809000	Weak transcription	NHEK	skin
14	chr16:79805200-79809200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:79805200-79809200	Weak transcription	HMEC	breast
16	chr16:79805200-79810000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:79805200-79810200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr16:79805200-79810200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr16:79805200-79810200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr16:79805200-79810200	Weak transcription	Brain Hippocampus Middle	brain
21	chr16:79805200-79810200	Weak transcription	NH-A	brain
22	chr16:79805400-79809400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:79805400-79810200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr16:79805400-79810200	Weak transcription	Adipose Nuclei	Adipose
25	chr16:79805400-79810200	Weak transcription	Thymus	Thymus
26	chr16:79805400-79810400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:79805400-79810400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr16:79805600-79810400	Weak transcription	Colonic Mucosa	Colon
29	chr16:79805800-79807200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr16:79806000-79810200	Weak transcription	Fetal Thymus	thymus
31	chr16:79806000-79810400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr16:79806200-79807600	Weak transcription	Fetal Stomach	stomach
33	chr16:79806200-79810200	Weak transcription	Fetal Kidney	kidney
34	chr16:79806200-79810400	Weak transcription	K562	blood
35	chr16:79806400-79810200	Weak transcription	Fetal Lung	lung
36	chr16:79806600-79809600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr16:79806600-79810200	Weak transcription	Fetal Muscle Leg	muscle

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