Variant report

Variant	rs8057458
Chromosome Location	chr16:83060151-83060152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:83054780..83056767-chr16:83059498..83061947,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10153232	0.83[YRI][hapmap]
rs11150533	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs12925746	0.85[YRI][hapmap]
rs12934355	0.85[LWK][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap]
rs16959002	1.00[ASN][1000 genomes]
rs1903623	1.00[CHD][hapmap]
rs1982608	1.00[CHD][hapmap]
rs35379386	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35993400	1.00[ASN][1000 genomes]
rs4329910	0.85[LWK][hapmap];0.83[MKK][hapmap];0.91[YRI][hapmap]
rs4528558	0.81[LWK][hapmap]
rs56203133	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66800366	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66961304	0.84[AFR][1000 genomes]
rs67266951	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67412520	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67787339	0.84[AFR][1000 genomes]
rs67999902	0.84[AFR][1000 genomes]
rs68166703	0.85[AFR][1000 genomes]
rs7204756	1.00[ASN][1000 genomes]
rs72794184	0.84[AFR][1000 genomes]
rs72794188	0.86[AFR][1000 genomes]
rs73594215	1.00[ASN][1000 genomes]
rs73594218	1.00[ASN][1000 genomes]
rs73594221	1.00[ASN][1000 genomes]
rs73594288	0.84[AFR][1000 genomes]
rs8060498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061982	0.81[AFR][1000 genomes]
rs8062574	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063818	1.00[ASN][1000 genomes]
rs8064047	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1903	chr16:83035452-83080314	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv949450	chr16:83044981-83099707	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv573385	chr16:83059913-83080502	Enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:83037000-83066000	Weak transcription	HSMMtube	muscle
2	chr16:83047400-83065400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:83047600-83067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:83054600-83063200	Weak transcription	Left Ventricle	heart
5	chr16:83054800-83064400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:83056200-83065200	Weak transcription	Aorta	Aorta
7	chr16:83057400-83068400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:83058600-83061400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:83058600-83065600	Weak transcription	NHEK	skin
10	chr16:83058800-83070200	Weak transcription	Psoas Muscle	Psoas
11	chr16:83059200-83066000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:83059200-83066200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr16:83059400-83065200	Weak transcription	HSMM	muscle
14	chr16:83060000-83060400	Weak transcription	Right Ventricle	heart

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