Variant report

Variant	rs805831
Chromosome Location	chr2:32484228-32484229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11691939	0.81[EUR][1000 genomes]
rs12996943	0.81[EUR][1000 genomes]
rs13006495	0.83[EUR][1000 genomes]
rs177082	0.83[EUR][1000 genomes]
rs212682	0.85[EUR][1000 genomes]
rs212684	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs212689	0.83[EUR][1000 genomes]
rs212690	0.83[EUR][1000 genomes]
rs212691	0.83[EUR][1000 genomes]
rs212696	0.83[EUR][1000 genomes]
rs212736	0.82[EUR][1000 genomes]
rs212751	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs212754	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs212761	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2294178	0.83[EUR][1000 genomes]
rs34197800	0.83[EUR][1000 genomes]
rs375050	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3769605	0.80[EUR][1000 genomes]
rs410469	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs462878	0.83[EUR][1000 genomes]
rs56322034	0.81[EUR][1000 genomes]
rs6543648	0.83[EUR][1000 genomes]
rs6756085	0.81[EUR][1000 genomes]
rs686005	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7562653	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7574000	0.81[EUR][1000 genomes]
rs9789593	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv817386	chr2:32332893-32724794	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001038	chr2:32333378-32657112	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1009359	chr2:32333378-32725117	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv535613	chr2:32333378-32725117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	esv2422335	chr2:32412330-33200581	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv2667	chr2:32444810-32489755	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv1002120	chr2:32470452-32539443	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1004279	chr2:32470452-32543369	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32448800-32484800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:32463600-32487000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:32477600-32486800	Weak transcription	Primary B cells from cord blood	blood
4	chr2:32480200-32488000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:32483600-32486400	Weak transcription	Spleen	Spleen
6	chr2:32483600-32486600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
7	chr2:32483800-32486000	Genic enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:32484200-32485000	Weak transcription	Primary monocytes fromperipheralblood	blood

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