Variant report

Variant	rs8058928
Chromosome Location	chr16:30704312-30704313
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30702240..30706910-chr16:30707972..30711659,5	MCF-7	breast:
2	chr16:30696465..30699786-chr16:30701114..30706314,5	K562	blood:
3	chr16:30697643..30699472-chr16:30703820..30706314,2	K562	blood:
4	chr16:30665347..30684079-chr16:30697204..30714344,66	MCF-7	breast:
5	chr16:30668429..30670284-chr16:30702099..30705078,2	K562	blood:
6	chr16:30667507..30674392-chr16:30704170..30712522,40	MCF-7	breast:
7	chr16:30703961..30707044-chr16:30751881..30755239,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156858	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000080603	Chromatin interaction
ENSG00000261840	Chromatin interaction
ENSG00000260899	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13338946	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289442	0.86[EUR][1000 genomes]
rs35629860	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35969813	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747481	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4616297	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6565201	0.87[EUR][1000 genomes]
rs67128646	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67456513	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187359	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197770	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198250	0.87[EUR][1000 genomes]
rs7204278	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048448	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8051050	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8055315	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8055661	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8058578	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885107	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9928572	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30682600-30705200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:30699800-30705000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr16:30703000-30705800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr16:30703400-30705000	Weak transcription	Fetal Intestine Small	intestine
5	chr16:30703600-30704400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr16:30703600-30704800	Weak transcription	HepG2	liver
7	chr16:30703600-30705000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:30703600-30706800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr16:30703800-30704400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr16:30703800-30704800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr16:30703800-30705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:30703800-30705000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:30703800-30705200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr16:30703800-30705600	Enhancers	K562	blood
15	chr16:30703800-30706200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr16:30703800-30707000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr16:30703800-30708600	Weak transcription	Fetal Heart	heart
18	chr16:30703800-30708600	Weak transcription	Fetal Intestine Large	intestine
19	chr16:30704000-30705200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr16:30704000-30706400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr16:30704200-30705800	Enhancers	Placenta	Placenta

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