Variant report

Variant	rs8059026
Chromosome Location	chr16:71916470-71916471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:252)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:252 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr16:71916287-71916669	K562	blood:	n/a	n/a
2	RAD21	chr16:71916276-71916602	MCF-7	breast:	n/a	n/a
3	SPI1	chr16:71916317-71916628	GM12878	blood:	n/a	n/a
4	CTCF	chr16:71916340-71916490	WI-38	lung:	n/a	n/a
5	YY1	chr16:71916377-71916673	GM12878	blood:	n/a	n/a
6	CTCF	chr16:71916280-71916719	K562	blood:	n/a	n/a
7	RAD21	chr16:71916391-71916585	HepG2	liver:	n/a	n/a
8	CTCF	chr16:71916362-71916609	Hela-S3	cervix:	n/a	n/a
9	TCF12	chr16:71916369-71916581	GM12878	blood:	n/a	n/a
10	CTCF	chr16:71916420-71916570	HFF	foreskin:	n/a	n/a
11	CTCF	chr16:71916420-71916570	GM12865	blood:	n/a	n/a
12	CTCF	chr16:71916440-71916590	GM12868	blood:	n/a	n/a
13	CTCF	chr16:71916440-71916590	GM12873	blood:	n/a	n/a
14	PML	chr16:71916219-71916862	GM12878	blood:	n/a	n/a
15	ZNF143	chr16:71916294-71916756	GM12878	blood:	n/a	n/a
16	FOS	chr16:71916358-71916638	MCF10A-Er-Src	breast:	n/a	n/a
17	CTCF	chr16:71916400-71916550	HUVEC	blood vessel:	n/a	n/a
18	SMC3	chr16:71916315-71916687	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr16:71916340-71916490	A549	lung:	n/a	n/a
20	EBF1	chr16:71916344-71917509	GM12878	blood:	n/a	n/a
21	CTCF	chr16:71916380-71916530	GM12867	blood:	n/a	n/a
22	RAD21	chr16:71916414-71916540	K562	blood:	n/a	n/a
23	CTCF	chr16:71916460-71916610	GM12864	blood:	n/a	n/a
24	CTCF	chr16:71916440-71916590	GM12864	blood:	n/a	n/a
25	WRNIP1	chr16:71916427-71917397	GM12878	blood:	n/a	n/a
26	RAD21	chr16:71916289-71916552	GM12878	blood:	n/a	n/a
27	SPI1	chr16:71916444-71916598	GM12878	blood:	n/a	n/a
28	CTCF	chr16:71916416-71916595	GM13976	blood:	n/a	n/a
29	CTCF	chr16:71916400-71916550	AG04449	skin:	n/a	n/a
30	POU2F2	chr16:71916356-71916674	GM12891	blood:	n/a	n/a
31	CTCF	chr16:71916357-71916627	Lung_OC	lung:	n/a	n/a
32	RAD21	chr16:71916300-71916665	IMR90	lung:	n/a	n/a
33	CTCF	chr16:71916380-71916530	NHEK	skin:	n/a	n/a
34	ATF2	chr16:71916243-71916778	GM12878	blood:	n/a	n/a
35	SPI1	chr16:71916382-71916708	HL-60	blood:	n/a	n/a
36	CTCF	chr16:71916400-71916550	HPF	lung:	n/a	n/a
37	CTCF	chr16:71916440-71916590	BE2_C	brain:	n/a	n/a
38	PAX5	chr16:71916331-71916767	GM12878	blood:	n/a	chr16:71916525-71916544
39	CTCF	chr16:71916400-71916550	MCF-7	breast:	n/a	n/a
40	CTCF	chr16:71916420-71916570	HPF	lung:	n/a	n/a
41	RAD21	chr16:71916262-71916689	A549	lung:	n/a	n/a
42	POU2F2	chr16:71916282-71916751	GM12878	blood:	n/a	n/a
43	CTCF	chr16:71916379-71916615	GM10266	blood:	n/a	n/a
44	CTCF	chr16:71916420-71916570	GM12874	blood:	n/a	n/a
45	RAD21	chr16:71916303-71916679	HepG2	liver:	n/a	n/a
46	RCOR1	chr16:71916334-71916630	K562	blood:	n/a	n/a
47	CTCF	chr16:71916400-71916550	Caco-2	colon:	n/a	n/a
48	CTCF	chr16:71916420-71916570	BE2_C	brain:	n/a	n/a
49	RELA	chr16:71916349-71917527	GM18951	blood:	n/a	n/a
50	CTCF	chr16:71916400-71916550	HCPEpiC	choroid plexus:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71879026..71881212-chr16:71914841..71917763,3	MCF-7	breast:
2	chr16:71912441..71914997-chr16:71916463..71919857,4	K562	blood:
3	chr16:71840534..71843948-chr16:71913805..71919381,8	MCF-7	breast:
4	chr16:71756102..71758936-chr16:71915033..71919382,3	MCF-7	breast:
5	chr16:71879784..71882644-chr16:71915890..71918554,5	K562	blood:
6	chr16:71840886..71843601-chr16:71915608..71919137,4	MCF-7	breast:
7	chr16:71916310..71918495-chr16:71961448..71964132,2	K562	blood:
8	chr16:71916398..71918691-chr16:71923967..71926523,2	K562	blood:
9	chr16:71879784..71882644-chr16:71915005..71918554,5	K562	blood:
10	chr16:71879516..71883331-chr16:71913609..71918904,8	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF821	TF binding region
ENSG00000261765	TF binding region
IST1	TF binding region
ENSG00000263320	Chromatin interaction
ENSG00000166747	Chromatin interaction
ENSG00000102984	Chromatin interaction
ENSG00000261513	Chromatin interaction
ENSG00000182149	Chromatin interaction
ENSG00000040199	Chromatin interaction
ENSG00000224470	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7186644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198082	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8063207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71881200-71916600	Weak transcription	Small Intestine	intestine
2	chr16:71885600-71916600	Weak transcription	Stomach Mucosa	stomach
3	chr16:71894600-71916800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:71896800-71916600	Weak transcription	NHLF	lung
5	chr16:71898000-71916800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:71898200-71916600	Weak transcription	Psoas Muscle	Psoas
7	chr16:71898400-71916800	Weak transcription	Right Ventricle	heart
8	chr16:71899000-71916600	Weak transcription	Esophagus	oesophagus
9	chr16:71899000-71917000	Weak transcription	Pancreas	Pancrea
10	chr16:71899600-71916600	Weak transcription	Colonic Mucosa	Colon
11	chr16:71899800-71916800	Weak transcription	Brain Substantia Nigra	brain
12	chr16:71900200-71917200	Weak transcription	Gastric	stomach
13	chr16:71902200-71916800	Weak transcription	Aorta	Aorta
14	chr16:71902600-71916600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr16:71904000-71916600	Weak transcription	Fetal Heart	heart
16	chr16:71911600-71917000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr16:71911600-71917000	Weak transcription	Lung	lung
18	chr16:71913200-71916600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr16:71913600-71916600	Weak transcription	HepG2	liver
20	chr16:71914200-71917000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr16:71914600-71916600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:71914600-71916600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr16:71914600-71916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr16:71914600-71917000	Weak transcription	Ovary	ovary
25	chr16:71914800-71916600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:71914800-71916600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr16:71914800-71916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr16:71914800-71916800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr16:71914800-71916800	Weak transcription	Spleen	Spleen
30	chr16:71914800-71917000	Weak transcription	Left Ventricle	heart
31	chr16:71914800-71918800	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr16:71915000-71916600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr16:71915000-71916600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr16:71915000-71916600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr16:71915000-71916600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr16:71915000-71916600	Weak transcription	HSMMtube	muscle
37	chr16:71915000-71916600	Weak transcription	NHDF-Ad	bronchial
38	chr16:71915200-71916600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr16:71915200-71916600	Weak transcription	Colon Smooth Muscle	Colon
40	chr16:71915200-71916600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr16:71915200-71916800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr16:71915400-71916600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr16:71915400-71916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr16:71915400-71916600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr16:71915400-71916600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr16:71915400-71916600	Weak transcription	Fetal Muscle Leg	muscle
47	chr16:71915400-71916600	Weak transcription	Osteobl	bone
48	chr16:71915400-71917000	Active TSS	Fetal Brain Female	brain
49	chr16:71915600-71916600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:71915600-71916600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links