Variant report

Variant	rs8061263
Chromosome Location	chr16:80691277-80691278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80689193..80691677-chr16:80694873..80698122,4	MCF-7	breast:
2	chr16:80690511..80692099-chr16:80709301..80711320,2	MCF-7	breast:
3	chr16:80577485..80580342-chr16:80689346..80691790,2	MCF-7	breast:
4	chr16:80690433..80692139-chr16:80693277..80695460,2	K562	blood:

Variant related genes	Relation type
ENSG00000168589	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7194240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
2	chr16:80685800-80691800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:80687000-80716200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:80687200-80692400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr16:80688200-80692800	Weak transcription	Aorta	Aorta
6	chr16:80689000-80751000	Weak transcription	Pancreas	Pancrea
7	chr16:80689800-80700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:80690000-80691600	Enhancers	Small Intestine	intestine
9	chr16:80690000-80694600	Weak transcription	Hela-S3	cervix
10	chr16:80690200-80691600	Flanking Active TSS	GM12878-XiMat	blood
11	chr16:80690200-80691800	Enhancers	HUVEC	blood vessel
12	chr16:80690600-80728000	Weak transcription	Gastric	stomach
13	chr16:80690800-80703200	Weak transcription	Esophagus	oesophagus
14	chr16:80691000-80691400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr16:80691000-80691400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr16:80691000-80691600	Enhancers	Primary B cells from peripheral blood	blood
17	chr16:80691000-80691600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr16:80691000-80691600	Enhancers	Liver	Liver
19	chr16:80691000-80691800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr16:80691000-80691800	Enhancers	Duodenum Mucosa	Duodenum
21	chr16:80691000-80692200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr16:80691000-80692200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr16:80691000-80704400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr16:80691200-80691600	Enhancers	Primary T cells from cord blood	blood
25	chr16:80691200-80691600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr16:80691200-80691800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr16:80691200-80691800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr16:80691200-80692000	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links