Variant report

Variant	rs8062492
Chromosome Location	chr16:73069718-73069719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73029969..73032717-chr16:73066881..73070752,3	MCF-7	breast:
2	chr16:73052543..73056273-chr16:73069076..73072380,4	MCF-7	breast:
3	chr16:73067802..73070400-chr16:73071930..73073928,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11075960	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11075961	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11646668	0.94[AFR][1000 genomes]
rs4788696	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv827730	chr16:73066699-73115642	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv827732	chr16:73069343-73116594	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73055200-73076400	Weak transcription	Brain Angular Gyrus	brain
2	chr16:73059000-73072000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:73059400-73076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:73059600-73069800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr16:73059800-73070000	Weak transcription	Colonic Mucosa	Colon
6	chr16:73060600-73072600	Enhancers	Fetal Lung	lung
7	chr16:73061200-73070000	Enhancers	Placenta	Placenta
8	chr16:73062400-73071800	Weak transcription	Spleen	Spleen
9	chr16:73062800-73069800	Weak transcription	Stomach Mucosa	stomach
10	chr16:73063200-73070200	Weak transcription	Esophagus	oesophagus
11	chr16:73063200-73073800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr16:73064600-73070000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:73064600-73074400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr16:73064800-73069800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr16:73065200-73069800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr16:73065200-73070200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:73065200-73072400	Enhancers	Fetal Muscle Leg	muscle
18	chr16:73065200-73072600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr16:73065200-73074000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr16:73065800-73069800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr16:73066200-73070200	Enhancers	Primary hematopoietic stem cells	blood
22	chr16:73066800-73070000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
23	chr16:73067000-73070600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr16:73067000-73079200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr16:73067200-73069800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr16:73067200-73069800	Weak transcription	Primary B cells from cord blood	blood
27	chr16:73067200-73069800	Enhancers	Stomach Smooth Muscle	stomach
28	chr16:73067200-73070000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr16:73067200-73071800	Weak transcription	Liver	Liver
30	chr16:73067200-73078400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:73067600-73070000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
32	chr16:73067800-73069800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
33	chr16:73067800-73069800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
34	chr16:73067800-73069800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
35	chr16:73067800-73069800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
36	chr16:73067800-73069800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
37	chr16:73067800-73070000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
38	chr16:73067800-73070000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr16:73067800-73070600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
40	chr16:73067800-73070800	Enhancers	Brain Substantia Nigra	brain
41	chr16:73067800-73081400	Weak transcription	Small Intestine	intestine
42	chr16:73068000-73069800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr16:73068000-73070000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr16:73068000-73070000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:73068000-73077400	Weak transcription	NHDF-Ad	bronchial
46	chr16:73068200-73069800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
47	chr16:73068200-73070000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr16:73068200-73070200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr16:73068200-73071000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr16:73068400-73069800	Weak transcription	NH-A	brain

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