Variant report

Variant	rs806342
Chromosome Location	chr13:50856096-50856097
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50854880..50857569-chr13:50892767..50895281,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs706604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73495882	1.00[EUR][1000 genomes]
rs73495892	1.00[EUR][1000 genomes]
rs73495894	1.00[EUR][1000 genomes]
rs73498021	1.00[EUR][1000 genomes]
rs73498033	1.00[EUR][1000 genomes]
rs73498084	1.00[EUR][1000 genomes]
rs73500218	1.00[EUR][1000 genomes]
rs806304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806340	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806347	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806350	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806357	0.83[AMR][1000 genomes]
rs806358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs812607	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs9596241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50851800-50856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:50854000-50856200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:50854000-50856400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:50854000-50856400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:50854400-50856400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:50854400-50856400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:50855000-50860200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:50855400-50858600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:50855600-50856600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:50855800-50857000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:50856000-50856600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:50856000-50857400	Enhancers	HepG2	liver
13	chr13:50856000-50858400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:50856000-50858600	Enhancers	HUES48 Cell Line	embryonic stem cell

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