Variant report

Variant	rs8063582
Chromosome Location	chr16:79638843-79638844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79636935..79639673-chr16:79664462..79666392,2	MCF-7	breast:
2	chr16:79638454..79641021-chr16:79697878..79699987,2	K562	blood:
3	chr16:79635014..79637363-chr16:79638554..79641857,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71398161	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv457554	chr16:79608408-79645989	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv573289	chr16:79608408-79645989	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv827768	chr16:79615278-79640094	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79635600-79652400	Weak transcription	Spleen	Spleen
2	chr16:79635800-79639600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:79635800-79640000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:79635800-79640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:79636000-79639400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:79636200-79640200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr16:79636200-79653800	Weak transcription	Right Atrium	heart
8	chr16:79636400-79639600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr16:79636400-79640000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr16:79636600-79639600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr16:79636600-79639600	Weak transcription	NH-A	brain
12	chr16:79636600-79639600	Weak transcription	Osteobl	bone
13	chr16:79636600-79639800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr16:79636600-79640000	Weak transcription	Fetal Thymus	thymus
15	chr16:79636600-79640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:79636600-79641400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr16:79636600-79642600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:79636800-79639600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr16:79636800-79639800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr16:79636800-79639800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:79636800-79640200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr16:79636800-79641200	Weak transcription	Colon Smooth Muscle	Colon
23	chr16:79636800-79641200	Weak transcription	HSMM	muscle
24	chr16:79636800-79641400	Weak transcription	HSMMtube	muscle
25	chr16:79636800-79646400	Weak transcription	NHLF	lung
26	chr16:79637000-79639400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr16:79637000-79639400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr16:79637000-79639400	Weak transcription	HMEC	breast
29	chr16:79637000-79639600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr16:79637000-79639600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr16:79637000-79639800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr16:79637000-79639800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr16:79637000-79640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr16:79637000-79640000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr16:79637000-79640000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr16:79637000-79641200	Weak transcription	Fetal Muscle Leg	muscle
37	chr16:79637000-79641200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr16:79637000-79641400	Weak transcription	Brain Hippocampus Middle	brain
39	chr16:79637000-79641400	Weak transcription	Psoas Muscle	Psoas
40	chr16:79637200-79639200	Weak transcription	NHEK	skin
41	chr16:79637200-79639600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr16:79637200-79639800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr16:79637200-79639800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:79637200-79641200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr16:79637200-79641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr16:79637200-79641400	Weak transcription	Fetal Stomach	stomach
47	chr16:79637200-79641600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr16:79637600-79639000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr16:79638200-79639200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr16:79638200-79639600	Weak transcription	Adipose Nuclei	Adipose

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