Variant report

Variant	rs8064272
Chromosome Location	chr17:15409434-15409435
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12325699	1.00[AMR][1000 genomes]
rs12325794	1.00[AMR][1000 genomes]
rs12325796	1.00[AMR][1000 genomes]
rs6502452	1.00[AMR][1000 genomes]
rs6502453	1.00[AMR][1000 genomes]
rs6502454	1.00[AMR][1000 genomes]
rs6502455	1.00[AMR][1000 genomes]
rs6502456	1.00[AMR][1000 genomes]
rs7207056	1.00[AMR][1000 genomes]
rs7207202	1.00[AMR][1000 genomes]
rs7207218	1.00[AMR][1000 genomes]
rs7207233	0.89[AMR][1000 genomes]
rs7207567	1.00[AMR][1000 genomes]
rs7208444	1.00[AMR][1000 genomes]
rs7211746	1.00[AMR][1000 genomes]
rs7212864	1.00[AMR][1000 genomes]
rs7213647	1.00[AMR][1000 genomes]
rs7215176	1.00[AMR][1000 genomes]
rs7217462	1.00[AMR][1000 genomes]
rs7219578	1.00[AMR][1000 genomes]
rs7226038	1.00[AMR][1000 genomes]
rs7226319	1.00[AMR][1000 genomes]
rs8064369	1.00[AMR][1000 genomes]
rs8064896	1.00[AMR][1000 genomes]
rs8071393	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8072242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8074918	1.00[AMR][1000 genomes]
rs9674575	1.00[AMR][1000 genomes]
rs9674638	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv960057	chr17:15408579-15411759	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15383200-15419600	Weak transcription	Thymus	Thymus
2	chr17:15383400-15455000	Weak transcription	Gastric	stomach
3	chr17:15385600-15418000	Weak transcription	Pancreas	Pancrea
4	chr17:15387200-15417000	Weak transcription	Small Intestine	intestine
5	chr17:15393400-15451200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr17:15394600-15417000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr17:15394800-15450800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:15395000-15410200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:15395400-15413400	Weak transcription	Hela-S3	cervix
10	chr17:15396000-15417200	Weak transcription	Fetal Brain Male	brain
11	chr17:15396800-15420400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr17:15400800-15413000	Weak transcription	NH-A	brain
13	chr17:15401200-15420400	Weak transcription	Psoas Muscle	Psoas
14	chr17:15402800-15410200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:15403000-15410200	Weak transcription	Fetal Brain Female	brain
16	chr17:15405400-15410200	Weak transcription	Primary T cells from cord blood	blood
17	chr17:15405400-15418200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr17:15405400-15419000	Weak transcription	Liver	Liver
19	chr17:15405600-15410200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:15405600-15411200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:15406000-15410200	Weak transcription	Fetal Intestine Large	intestine
22	chr17:15406000-15411600	Weak transcription	Lung	lung
23	chr17:15406000-15411800	Weak transcription	HSMMtube	muscle
24	chr17:15406000-15416800	Weak transcription	K562	blood
25	chr17:15406200-15411400	Weak transcription	Ovary	ovary
26	chr17:15406200-15414600	Weak transcription	Brain Angular Gyrus	brain
27	chr17:15406200-15414800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr17:15406200-15416800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr17:15406200-15420600	Weak transcription	Colonic Mucosa	Colon
30	chr17:15406600-15410000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr17:15406600-15410000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr17:15406600-15410200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr17:15406600-15410200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr17:15406600-15410200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr17:15406600-15410200	Weak transcription	Brain Germinal Matrix	brain
36	chr17:15406600-15410400	Weak transcription	Fetal Heart	heart
37	chr17:15406600-15411400	Weak transcription	Fetal Muscle Leg	muscle
38	chr17:15406600-15411400	Weak transcription	Left Ventricle	heart
39	chr17:15406600-15411400	Weak transcription	NHDF-Ad	bronchial
40	chr17:15406600-15411400	Weak transcription	NHLF	lung
41	chr17:15406600-15411600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr17:15406600-15411800	Weak transcription	Right Atrium	heart
43	chr17:15406600-15412800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr17:15406600-15412800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr17:15406600-15413200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr17:15406600-15413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr17:15406600-15413400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr17:15406600-15413400	Weak transcription	Brain Substantia Nigra	brain
49	chr17:15406600-15413400	Weak transcription	Osteobl	bone
50	chr17:15406600-15414400	Weak transcription	Brain Cingulate Gyrus	brain

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