Variant report

Variant	rs8064668
Chromosome Location	chr17:19776064-19776065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16960425	0.89[AFR][1000 genomes]
rs28416178	0.89[AFR][1000 genomes]
rs28491526	0.84[AFR][1000 genomes]
rs9889660	0.82[AFR][1000 genomes]
rs9895806	0.89[AFR][1000 genomes]
rs9905570	0.84[AFR][1000 genomes]
rs9906047	0.89[AFR][1000 genomes]
rs9906125	0.89[AFR][1000 genomes]
rs9910607	0.89[AFR][1000 genomes]
rs9912443	0.81[AFR][1000 genomes]
rs9913673	0.89[AFR][1000 genomes]
rs9914597	0.89[AFR][1000 genomes]
rs9915262	0.93[AFR][1000 genomes]
rs9915902	0.86[AFR][1000 genomes]
rs9916309	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1057469	chr17:19696714-19787062	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19771200-19778800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:19771600-19779000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr17:19771600-19787000	Weak transcription	Gastric	stomach
4	chr17:19771800-19776200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:19771800-19777800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:19771800-19780000	Weak transcription	Pancreas	Pancrea
7	chr17:19772200-19776200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr17:19774400-19777600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:19774400-19779200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:19774800-19778800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:19774800-19778800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr17:19775000-19778600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr17:19775200-19776600	Weak transcription	Primary T cells from cord blood	blood
14	chr17:19775200-19778600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr17:19775200-19778800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr17:19776000-19782200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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