Variant report

Variant	rs8065990
Chromosome Location	chr17:45591166-45591167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10048173	0.91[EUR][1000 genomes]
rs11079774	0.82[CEU][hapmap]
rs11079784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11650210	0.82[AFR][1000 genomes]
rs11869940	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11870057	0.93[ASN][1000 genomes]
rs11870935	0.89[CEU][hapmap]
rs11871606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12051716	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12103836	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12452315	0.92[CEU][hapmap]
rs12602134	0.85[EUR][1000 genomes]
rs12943464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2085755	0.80[EUR][1000 genomes]
rs2317826	0.92[CEU][hapmap]
rs35159316	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3760370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3809868	0.92[CEU][hapmap]
rs4239162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4239163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4289035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4793842	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4793978	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4794001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4794007	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4794048	0.92[CEU][hapmap]
rs4794051	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4794058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62073966	0.81[EUR][1000 genomes]
rs62076549	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6503796	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6504872	0.92[CEU][hapmap]
rs6504963	0.92[AFR][1000 genomes]
rs7206971	0.93[CEU][hapmap]
rs7210738	0.92[CEU][hapmap]
rs7214799	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7221548	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7222851	0.92[EUR][1000 genomes]
rs72829689	0.83[ASN][1000 genomes]
rs7350906	0.89[EUR][1000 genomes]
rs7405889	0.82[EUR][1000 genomes]
rs8065669	0.92[CEU][hapmap]
rs8067286	0.84[EUR][1000 genomes]
rs8070463	0.85[CEU][hapmap]
rs8072100	0.93[CEU][hapmap]
rs8072644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8074149	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8075411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8078686	0.88[CEU][hapmap]
rs8078880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9635762	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9903898	0.82[EUR][1000 genomes]
rs9911944	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv516872	chr17:45419139-45702280	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv525267	chr17:45451894-45735706	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1806110	chr17:45477544-45673592	Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv833468	chr17:45511563-45683164	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv469573	chr17:45511582-45698942	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv471701	chr17:45511583-45698942	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1793478	chr17:45518444-45671051	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1811231	chr17:45520374-45764956	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv1813964	chr17:45520374-45764956	Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv2758458	chr17:45520374-45764956	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv2758693	chr17:45520374-45764956	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	nsv428344	chr17:45520374-45764956	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	nsv908569	chr17:45537395-45603094	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	esv1808961	chr17:45542951-45664746	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	esv33689	chr17:45551959-45664575	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv471513	chr17:45552080-45671439	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	nsv978433	chr17:45560111-45600707	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv908570	chr17:45571502-45684651	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	esv1818529	chr17:45583088-45683095	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs8065990	SCRN2	cis	lung	GTEx
rs8065990	TBKBP1	cis	Artery Tibial	GTEx
rs8065990	KPNB1	Cis_1M	lymphoblastoid	RTeQTL
rs8065990	TBKBP1	cis	Nerve Tibial	GTEx
rs8065990	MRPL45P2	cis	Muscle Skeletal	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45589000-45591200	Enhancers	Placenta	Placenta
2	chr17:45589400-45596200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:45589600-45591400	Enhancers	Hela-S3	cervix
4	chr17:45589600-45596600	Weak transcription	A549	lung
5	chr17:45590600-45596000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr17:45590600-45596400	Weak transcription	Osteobl	bone

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