Variant report

Variant	rs8066772
Chromosome Location	chr17:15302699-15302700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15302589..15306047-chr17:15309036..15311805,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239888	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73978240	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15300800-15302800	Enhancers	Ovary	ovary
2	chr17:15300800-15302800	Enhancers	Pancreas	Pancrea
3	chr17:15300800-15303000	Enhancers	Fetal Stomach	stomach
4	chr17:15301000-15302800	Enhancers	Brain Substantia Nigra	brain
5	chr17:15301000-15302800	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr17:15301000-15302800	Enhancers	Fetal Muscle Trunk	muscle
7	chr17:15301000-15302800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr17:15301000-15302800	Enhancers	NHEK	skin
9	chr17:15301000-15303000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr17:15301000-15303000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr17:15301000-15303000	Enhancers	Fetal Muscle Leg	muscle
12	chr17:15301000-15303000	Enhancers	Left Ventricle	heart
13	chr17:15301000-15303000	Enhancers	Rectal Smooth Muscle	rectum
14	chr17:15301000-15303000	Enhancers	HMEC	breast
15	chr17:15301000-15303200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:15301000-15303200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr17:15301200-15302800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:15301200-15302800	Enhancers	Fetal Heart	heart
19	chr17:15301200-15303000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr17:15301200-15303000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr17:15301200-15303200	Enhancers	NHLF	lung
22	chr17:15301400-15302800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:15301400-15302800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr17:15301400-15302800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr17:15301400-15302800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr17:15301400-15302800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr17:15301400-15302800	Enhancers	Right Atrium	heart
28	chr17:15301400-15302800	Enhancers	Right Ventricle	heart
29	chr17:15301400-15303000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:15301400-15303000	Enhancers	Brain Angular Gyrus	brain
31	chr17:15301400-15303000	Enhancers	HSMMtube	muscle
32	chr17:15301400-15303000	Enhancers	HUVEC	blood vessel
33	chr17:15301400-15303200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr17:15301400-15303200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr17:15301600-15302800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:15301600-15302800	Enhancers	A549	lung
37	chr17:15301600-15303000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr17:15301600-15303200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr17:15301800-15302800	Flanking Active TSS	NH-A	brain
40	chr17:15302000-15302800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr17:15302000-15302800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr17:15302000-15303000	Enhancers	Brain Cingulate Gyrus	brain
43	chr17:15302000-15303000	Enhancers	Stomach Smooth Muscle	stomach
44	chr17:15302000-15307800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr17:15302200-15302800	Flanking Active TSS	NHDF-Ad	bronchial
46	chr17:15302200-15303000	Enhancers	HepG2	liver
47	chr17:15302400-15303000	Enhancers	Osteobl	bone
48	chr17:15302400-15303200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr17:15302400-15303200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr17:15302400-15306600	Weak transcription	Small Intestine	intestine

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