Variant report

Variant	rs807195
Chromosome Location	chr3:53616011-53616012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs709321	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs709322	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs898407	1.00[AMR][1000 genomes]
rs9311507	1.00[CEU][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605600-53619600	Weak transcription	Spleen	Spleen
2	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
3	chr3:53607600-53619800	Weak transcription	Lung	lung
4	chr3:53609400-53619400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:53611800-53616200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:53612200-53619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:53612600-53618400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:53613600-53616200	Strong transcription	Fetal Lung	lung
9	chr3:53614000-53616200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:53614000-53622200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:53614600-53617200	Weak transcription	Fetal Intestine Small	intestine
12	chr3:53615000-53618600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:53615600-53616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:53615600-53616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:53615600-53617800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:53615600-53618200	Strong transcription	Fetal Intestine Large	intestine
17	chr3:53615600-53618200	Enhancers	HMEC	breast
18	chr3:53615800-53617000	Enhancers	Fetal Thymus	thymus
19	chr3:53615800-53618200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:53616000-53616800	Enhancers	H1 Cell Line	embryonic stem cell

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