Variant report

Variant	rs807526
Chromosome Location	chr6:24543720-24543721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24541947..24545276-chr6:24695054..24697889,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs699463	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs807511	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs807528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs807536	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs807537	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs807541	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
3	chr6:24532200-24545000	Weak transcription	K562	blood
4	chr6:24535000-24546200	Weak transcription	Pancreas	Pancrea
5	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
8	chr6:24535400-24550000	Weak transcription	Gastric	stomach
9	chr6:24535600-24544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:24535600-24546000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:24535600-24546800	Weak transcription	Dnd41	blood
12	chr6:24535600-24547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
16	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:24536000-24543800	Weak transcription	Primary T cells from cord blood	blood
18	chr6:24537000-24545400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:24537000-24546200	Weak transcription	Fetal Heart	heart
20	chr6:24538200-24544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:24538200-24544600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:24538200-24545800	Weak transcription	Aorta	Aorta
23	chr6:24538200-24546000	Weak transcription	HepG2	liver
24	chr6:24538200-24547400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr6:24538400-24547400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
27	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
28	chr6:24540400-24543800	Weak transcription	Left Ventricle	heart
29	chr6:24540800-24546400	Weak transcription	Liver	Liver
30	chr6:24540800-24547400	Weak transcription	Fetal Thymus	thymus
31	chr6:24540800-24547400	Weak transcription	Thymus	Thymus
32	chr6:24540800-24547600	Weak transcription	Fetal Stomach	stomach

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