Variant report

Variant	rs8075656
Chromosome Location	chr17:66413539-66413540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66286124..66289397-chr17:66411110..66414752,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141337	Chromatin interaction
ENSG00000108932	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12947036	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66395200-66416000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr17:66395400-66415800	Weak transcription	Right Ventricle	heart
3	chr17:66399800-66414200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr17:66410000-66415800	Weak transcription	Placenta	Placenta
5	chr17:66410200-66414400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr17:66410200-66415800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:66410200-66416000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr17:66410200-66416400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:66410200-66419000	Weak transcription	Esophagus	oesophagus
10	chr17:66410200-66432200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr17:66410400-66415800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:66410400-66415800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:66410400-66415800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr17:66410400-66415800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr17:66410400-66415800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:66410400-66415800	Weak transcription	Left Ventricle	heart
17	chr17:66410400-66416000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:66410400-66416000	Weak transcription	Osteobl	bone
19	chr17:66410400-66416400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:66410400-66416400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr17:66410400-66416400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr17:66410400-66416800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr17:66410400-66417800	Weak transcription	Ovary	ovary
24	chr17:66410400-66452400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr17:66410600-66414400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:66410600-66414800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr17:66410600-66415800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr17:66410600-66415800	Weak transcription	Adipose Nuclei	Adipose
29	chr17:66410600-66416000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr17:66410600-66416400	Weak transcription	Liver	Liver
31	chr17:66410600-66416800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr17:66410600-66417600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:66410600-66427800	Weak transcription	HMEC	breast
34	chr17:66410800-66414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:66410800-66415600	Weak transcription	Fetal Thymus	thymus
36	chr17:66410800-66416200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr17:66410800-66419400	Weak transcription	Thymus	Thymus
38	chr17:66411200-66414200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr17:66411200-66415800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr17:66411400-66416400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr17:66411400-66422400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr17:66411600-66416200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr17:66411600-66416200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr17:66411600-66416400	Weak transcription	HepG2	liver
45	chr17:66411600-66427800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr17:66411800-66415800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr17:66412000-66416000	Weak transcription	Primary T cells from cord blood	blood
48	chr17:66412200-66415800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr17:66412200-66421800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr17:66412200-66424800	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links