Variant report

Variant	rs8076011
Chromosome Location	chr17:59646914-59646915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59644855..59647910-chr17:59841335..59844150,3	MCF-7	breast:
2	chr17:59644698..59647505-chr20:52196256..52198648,3	MCF-7	breast:
3	chr17:57922174..57925590-chr17:59644631..59647005,4	MCF-7	breast:
4	chr17:57916840..57919644-chr17:59646847..59650521,3	MCF-7	breast:
5	chr17:59645361..59647604-chr20:52823496..52825003,2	MCF-7	breast:
6	chr11:88348048..88349548-chr17:59644695..59646956,2	MCF-7	breast:
7	chr17:59645769..59648011-chr17:59764387..59766837,2	MCF-7	breast:
8	chr17:59645174..59648291-chr20:49346675..49349528,3	MCF-7	breast:
9	chr17:59645078..59647528-chr20:52739899..52742175,2	MCF-7	breast:
10	chr17:59646337..59648248-chr20:55839360..55841998,2	MCF-7	breast:
11	chr10:93683550..93685113-chr17:59644992..59647516,2	MCF-7	breast:
12	chr17:59644932..59647511-chr20:49403932..49406632,2	MCF-7	breast:
13	chr17:59645929..59648016-chr20:61659710..61661386,2	MCF-7	breast:
14	chr17:59646374..59647932-chr20:49411300..49413192,2	MCF-7	breast:
15	chr17:59644866..59646960-chr7:2726523..2728836,2	MCF-7	breast:
16	chr17:59645061..59647542-chr4:153552803..153555273,2	MCF-7	breast:
17	chr17:59489572..59490208-chr17:59646822..59647354,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000174945	Chromatin interaction
ENSG00000199004	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16945425	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6504052	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217738	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7223059	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223702	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324640	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324654	0.88[EUR][1000 genomes]
rs73991929	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066288	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8067184	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069311	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070824	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59646600-59651800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:59646800-59647000	Enhancers	A549	lung
3	chr17:59646800-59652000	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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