Variant report

Variant	rs8078116
Chromosome Location	chr17:66728277-66728278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11077734	0.93[ASN][1000 genomes]
rs12150159	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12451052	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4383213	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66599911	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8065571	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8077076	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8081309	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9900449	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66721600-66728600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:66725200-66729200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:66726400-66729400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:66727000-66728800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:66727000-66730800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr17:66727200-66729800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:66727400-66729000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr17:66727400-66729600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr17:66727400-66729600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr17:66727400-66731200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:66727600-66728400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr17:66727600-66728800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:66727600-66730000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr17:66727600-66731200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr17:66727600-66731400	Enhancers	Ovary	ovary
16	chr17:66727800-66730200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr17:66727800-66730800	Enhancers	HepG2	liver
18	chr17:66728000-66728800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr17:66728200-66728400	Enhancers	Gastric	stomach
20	chr17:66728200-66728400	Enhancers	Pancreas	Pancrea
21	chr17:66728200-66728400	Enhancers	Right Atrium	heart
22	chr17:66728200-66728400	Enhancers	HSMM	muscle
23	chr17:66728200-66729200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr17:66728200-66729800	Enhancers	Fetal Intestine Large	intestine
25	chr17:66728200-66730000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr17:66728200-66730600	Enhancers	Stomach Mucosa	stomach
27	chr17:66728200-66731600	Enhancers	Fetal Heart	heart

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