Variant report

Variant	rs8078628
Chromosome Location	chr17:66812766-66812767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10048216	1.00[EUR][1000 genomes]
rs12103695	1.00[EUR][1000 genomes]
rs13342218	1.00[EUR][1000 genomes]
rs16973430	1.00[EUR][1000 genomes]
rs16973507	1.00[EUR][1000 genomes]
rs57920318	1.00[EUR][1000 genomes]
rs73998529	1.00[EUR][1000 genomes]
rs8081075	1.00[EUR][1000 genomes]
rs9890027	1.00[EUR][1000 genomes]
rs9893173	1.00[EUR][1000 genomes]
rs9895934	1.00[EUR][1000 genomes]
rs9899675	1.00[EUR][1000 genomes]
rs9901228	1.00[EUR][1000 genomes]
rs9908650	1.00[EUR][1000 genomes]
rs9915531	1.00[EUR][1000 genomes]
rs9916254	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66806000-66817200	Weak transcription	Ovary	ovary
2	chr17:66809600-66812800	Weak transcription	HepG2	liver
3	chr17:66809600-66814800	Weak transcription	Adipose Nuclei	Adipose
4	chr17:66809600-66814800	Weak transcription	Liver	Liver
5	chr17:66809800-66814200	Weak transcription	NHDF-Ad	bronchial
6	chr17:66809800-66817000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:66810200-66814000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:66810400-66814000	Weak transcription	Fetal Lung	lung
9	chr17:66811600-66816000	Enhancers	Fetal Muscle Leg	muscle
10	chr17:66811800-66817000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:66812200-66817200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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