Variant report

Variant	rs8079379
Chromosome Location	chr17:38224072-38224073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38223608..38228220-chr17:38255265..38258726,4	MCF-7	breast:
2	chr17:38220009..38224777-chr17:38226169..38228893,5	MCF-7	breast:
3	chr17:38219039..38222172-chr17:38223812..38229284,8	MCF-7	breast:
4	chr17:38223441..38229037-chr17:38277080..38281500,5	MCF-7	breast:
5	chr17:38221767..38224462-chr17:38295565..38297185,2	K562	blood:

Variant related genes	Relation type
ENSG00000126351	Chromatin interaction
ENSG00000126368	Chromatin interaction
ENSG00000188895	Chromatin interaction
ENSG00000108349	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8078399	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908221	chr17:38216522-38289003	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38220400-38224600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:38220600-38224800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:38220600-38224800	Enhancers	Fetal Thymus	thymus
4	chr17:38220600-38225000	Enhancers	Placenta	Placenta
5	chr17:38220800-38224600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr17:38220800-38224600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:38221000-38224400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr17:38221200-38224200	Enhancers	Dnd41	blood
9	chr17:38221200-38224400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr17:38221600-38224400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr17:38221600-38224600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:38221600-38224600	Enhancers	Stomach Mucosa	stomach
13	chr17:38221800-38224200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:38221800-38224200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr17:38221800-38224200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr17:38221800-38224400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:38221800-38224400	Enhancers	Adipose Nuclei	Adipose
18	chr17:38221800-38224400	Enhancers	Brain Cingulate Gyrus	brain
19	chr17:38221800-38224400	Enhancers	Duodenum Mucosa	Duodenum
20	chr17:38221800-38224400	Enhancers	Fetal Brain Male	brain
21	chr17:38221800-38224400	Weak transcription	Fetal Kidney	kidney
22	chr17:38221800-38224400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr17:38221800-38224600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr17:38221800-38224600	Enhancers	Brain Angular Gyrus	brain
25	chr17:38221800-38224600	Enhancers	Fetal Heart	heart
26	chr17:38221800-38224600	Enhancers	Fetal Lung	lung
27	chr17:38221800-38224600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr17:38221800-38224800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr17:38221800-38224800	Enhancers	K562	blood
30	chr17:38221800-38225000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr17:38221800-38225600	Enhancers	Fetal Muscle Trunk	muscle
32	chr17:38221800-38225600	Enhancers	Left Ventricle	heart
33	chr17:38221800-38225800	Weak transcription	Aorta	Aorta
34	chr17:38222000-38224200	Weak transcription	Primary B cells from cord blood	blood
35	chr17:38222000-38224200	Weak transcription	NHEK	skin
36	chr17:38222000-38224400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr17:38222000-38224600	Enhancers	A549	lung
38	chr17:38222200-38224600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr17:38222200-38224600	Enhancers	Colon Smooth Muscle	Colon
40	chr17:38222200-38224600	Weak transcription	Small Intestine	intestine
41	chr17:38222200-38224800	Genic enhancers	Fetal Stomach	stomach
42	chr17:38222400-38224400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr17:38222400-38224400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr17:38222400-38224400	Weak transcription	Liver	Liver
45	chr17:38222400-38224400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr17:38222400-38224400	Weak transcription	HMEC	breast
47	chr17:38222400-38224600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr17:38222400-38224600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr17:38222400-38224600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr17:38222400-38224600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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