Variant report

Variant	rs808362
Chromosome Location	chr6:15902012-15902013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15901497..15903351-chr6:15985477..15987001,2	K562	blood:
2	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
3	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
4	chr6:15900513..15903584-chr6:16127917..16131194,7	K562	blood:
5	chr6:15895140..15896852-chr6:15901818..15904507,2	K562	blood:
6	chr6:15900461..15903005-chr6:16121277..16123291,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs220893	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs398861	1.00[AFR][1000 genomes]
rs405988	0.90[EUR][1000 genomes]
rs407994	1.00[AFR][1000 genomes]
rs6911496	1.00[AFR][1000 genomes]
rs707843	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs808368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15894400-15903000	Enhancers	Placenta	Placenta
2	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
3	chr6:15898600-15905000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15899000-15905200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:15900400-15908000	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:15900600-15902600	Enhancers	Fetal Intestine Large	intestine
7	chr6:15900800-15902200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:15900800-15902400	Enhancers	Adipose Nuclei	Adipose
9	chr6:15900800-15902800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:15900800-15902800	Enhancers	Fetal Intestine Small	intestine
11	chr6:15901000-15902800	Flanking Active TSS	GM12878-XiMat	blood
12	chr6:15901200-15902200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:15901200-15902200	Flanking Active TSS	K562	blood
14	chr6:15901200-15902400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:15901200-15902600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:15901400-15902200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:15901400-15902200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:15901400-15902200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:15901400-15902400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:15901600-15902400	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:15901600-15902400	Enhancers	Fetal Thymus	thymus
22	chr6:15901600-15902600	Flanking Active TSS	NHEK	skin
23	chr6:15901600-15905400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:15901600-15906200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:15901800-15902200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:15901800-15902600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:15901800-15904600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:15902000-15902200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:15902000-15902200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:15902000-15902400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:15902000-15902400	Enhancers	Spleen	Spleen
32	chr6:15902000-15902600	Enhancers	Primary B cells from cord blood	blood
33	chr6:15902000-15903200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:15902000-15904600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:15902000-15904800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:15902000-15905200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:15902000-15905200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:15902000-15906200	Weak transcription	Placenta Amnion	Placenta Amnion

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