Variant report

Variant	rs8084021
Chromosome Location	chr18:8128486-8128487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8120805..8123312-chr18:8127343..8129770,2	K562	blood:
2	chr18:8127290..8130264-chr18:8136614..8139222,2	K562	blood:

Variant related genes	Relation type
ENSG00000173482	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73389711	1.00[EUR][1000 genomes]
rs8082876	1.00[EUR][1000 genomes]
rs8098561	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8099072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8103600-8136600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:8103600-8139200	Weak transcription	Brain Anterior Caudate	brain
3	chr18:8104200-8132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:8110400-8138600	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:8111200-8137200	Weak transcription	Left Ventricle	heart
6	chr18:8117200-8132600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:8117200-8137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr18:8117400-8153200	Weak transcription	Liver	Liver
9	chr18:8119200-8138200	Weak transcription	Ovary	ovary
10	chr18:8121200-8145600	Weak transcription	Primary T cells from cord blood	blood
11	chr18:8122400-8157400	Weak transcription	Aorta	Aorta
12	chr18:8122400-8160400	Weak transcription	Thymus	Thymus
13	chr18:8125200-8137200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:8125200-8138600	Weak transcription	Adipose Nuclei	Adipose
15	chr18:8125200-8138600	Weak transcription	Lung	lung
16	chr18:8125200-8141000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:8125600-8130600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr18:8125800-8130800	Weak transcription	NHDF-Ad	bronchial
19	chr18:8125800-8138800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:8125800-8139200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr18:8126200-8133000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr18:8126200-8139400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr18:8126600-8133000	Weak transcription	NHEK	skin
24	chr18:8126800-8133200	Weak transcription	HSMM	muscle
25	chr18:8126800-8153200	Weak transcription	A549	lung
26	chr18:8127000-8137400	Weak transcription	Psoas Muscle	Psoas
27	chr18:8128200-8128800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links