Variant report

Variant	rs8084104
Chromosome Location	chr18:9732124-9732125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9684743..9687685-chr18:9730508..9732228,2	K562	blood:
2	chr18:9729977..9732363-chr18:9736076..9738705,2	MCF-7	breast:
3	chr18:9728140..9730225-chr18:9731691..9733980,2	MCF-7	breast:
4	chr18:9729801..9734726-chr18:9735904..9739407,5	K562	blood:
5	chr18:9723813..9726677-chr18:9730594..9733052,4	K562	blood:
6	chr18:9727087..9729613-chr18:9731693..9733539,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1023869	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1023870	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1116699	0.83[EUR][1000 genomes]
rs1116700	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12956502	0.89[ASN][1000 genomes]
rs1455585	0.84[EUR][1000 genomes]
rs1598455	0.83[EUR][1000 genomes]
rs2045230	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2045231	0.90[EUR][1000 genomes]
rs2864780	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902842	0.83[EUR][1000 genomes]
rs4797386	1.00[CEU][hapmap]
rs4798836	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4798837	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4798839	0.83[EUR][1000 genomes]
rs4798841	0.83[EUR][1000 genomes]
rs4798842	0.83[EUR][1000 genomes]
rs4798844	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6506686	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7237162	0.83[EUR][1000 genomes]
rs8085665	0.83[EUR][1000 genomes]
rs8086347	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8087630	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8088290	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8099079	0.83[EUR][1000 genomes]
rs921835	0.83[EUR][1000 genomes]
rs921836	0.83[EUR][1000 genomes]
rs9949632	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3393081	chr18:9731352-9734450	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9710200-9733600	Weak transcription	Left Ventricle	heart
2	chr18:9713600-9732200	Weak transcription	Adipose Nuclei	Adipose
3	chr18:9716800-9732400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr18:9718200-9732600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr18:9719800-9733600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr18:9719800-9734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr18:9720000-9737400	Weak transcription	Brain Anterior Caudate	brain
8	chr18:9720000-9742000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr18:9720600-9733600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:9720600-9734200	Weak transcription	HUVEC	blood vessel
11	chr18:9720800-9737600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr18:9721000-9741600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:9721200-9737200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr18:9721800-9737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr18:9722400-9733400	Weak transcription	Right Ventricle	heart
16	chr18:9722400-9734400	Weak transcription	Colonic Mucosa	Colon
17	chr18:9723400-9732200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr18:9723800-9734200	Weak transcription	Fetal Lung	lung
19	chr18:9724000-9737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr18:9725000-9732200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr18:9725000-9737600	Weak transcription	Brain Hippocampus Middle	brain
22	chr18:9725600-9732600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:9725600-9733600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr18:9726200-9734200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr18:9726400-9732200	Weak transcription	Aorta	Aorta
26	chr18:9726400-9732200	Weak transcription	Spleen	Spleen
27	chr18:9726600-9732400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr18:9727200-9732200	Weak transcription	Fetal Muscle Leg	muscle
29	chr18:9727200-9732200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr18:9727200-9733600	Weak transcription	Esophagus	oesophagus
31	chr18:9730400-9732200	Enhancers	NHDF-Ad	bronchial
32	chr18:9730600-9732200	Weak transcription	Fetal Intestine Small	intestine
33	chr18:9730600-9732400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr18:9730800-9733600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr18:9731000-9733600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr18:9731000-9734200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr18:9731200-9732800	Weak transcription	K562	blood
38	chr18:9731200-9733000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr18:9731200-9733600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr18:9731200-9734000	Weak transcription	Liver	Liver
41	chr18:9731400-9732200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr18:9731400-9733200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr18:9731400-9733200	Weak transcription	A549	lung
44	chr18:9731400-9733600	Weak transcription	NHLF	lung
45	chr18:9731400-9734200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr18:9731400-9734400	Weak transcription	Thymus	Thymus
47	chr18:9731400-9737200	Weak transcription	HSMM	muscle
48	chr18:9731600-9733400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr18:9731600-9736400	Weak transcription	HMEC	breast
50	chr18:9732000-9732200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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