Variant report
Variant | rs808432 |
---|---|
Chromosome Location | chr16:46881378-46881379 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:46876960..46879253-chr16:46881282..46882965,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000260889 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1009391 | 0.86[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11860484 | 1.00[ASN][1000 genomes] |
rs11861896 | 1.00[ASN][1000 genomes] |
rs11862073 | 0.80[AMR][1000 genomes] |
rs12934580 | 1.00[ASN][1000 genomes] |
rs1641121 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1641122 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1651654 | 0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16948661 | 0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs17189741 | 0.86[CEU][hapmap];0.85[EUR][1000 genomes] |
rs17792604 | 0.81[CEU][hapmap] |
rs1869006 | 0.86[CEU][hapmap];1.00[ASN][1000 genomes] |
rs2192644 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2341041 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2341043 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36481 | 0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs40163 | 0.81[CEU][hapmap] |
rs415018 | 0.84[EUR][1000 genomes] |
rs42461 | 0.81[EUR][1000 genomes] |
rs4246381 | 1.00[ASN][1000 genomes] |
rs4966706 | 0.87[CEU][hapmap];0.97[YRI][hapmap];1.00[ASN][1000 genomes] |
rs4966708 | 1.00[ASN][1000 genomes] |
rs4966710 | 1.00[ASN][1000 genomes] |
rs4966713 | 1.00[ASN][1000 genomes] |
rs4967393 | 0.81[CEU][hapmap] |
rs4967576 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4967602 | 0.89[YRI][hapmap];1.00[ASN][1000 genomes] |
rs4967621 | 1.00[ASN][1000 genomes] |
rs56042735 | 1.00[ASN][1000 genomes] |
rs57127559 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57942848 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62057633 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6598777 | 1.00[ASN][1000 genomes] |
rs66804065 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs67205347 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs67211229 | 1.00[ASN][1000 genomes] |
rs67369452 | 1.00[ASN][1000 genomes] |
rs68162608 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs698418 | 0.83[EUR][1000 genomes] |
rs7187475 | 0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7196375 | 0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7197033 | 0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7197485 | 0.83[YRI][hapmap];1.00[ASN][1000 genomes] |
rs7198951 | 0.85[EUR][1000 genomes] |
rs72812428 | 1.00[ASN][1000 genomes] |
rs8044443 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8044684 | 0.81[CEU][hapmap] |
rs8045353 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs8051017 | 0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs8053137 | 1.00[ASN][1000 genomes] |
rs8053297 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8058734 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs808434 | 0.93[CEU][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs808780 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
rs808783 | 0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs9328668 | 0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9889198 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1059456 | chr16:46463770-47307580 | Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 65 gene(s) | inside rSNPs | diseases |
2 | nsv1066115 | chr16:46463770-47318415 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 65 gene(s) | inside rSNPs | diseases |
3 | nsv1066048 | chr16:46500740-46998694 | Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
4 | nsv542908 | chr16:46500740-46998694 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
5 | nsv1059147 | chr16:46500740-47010960 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
6 | nsv542909 | chr16:46500740-47010960 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
7 | nsv1061651 | chr16:46721805-46915511 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
8 | nsv1060982 | chr16:46721805-46938858 | Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
9 | nsv1067283 | chr16:46801709-46885218 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
10 | esv3519767 | chr16:46873184-46960035 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
11 | esv3519768 | chr16:46873184-46960035 | Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:46876600-46881600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr16:46878400-46883200 | Weak transcription | Spleen | Spleen |
3 | chr16:46881200-46881800 | Enhancers | H9 Cell Line | embryonic stem cell |
4 | chr16:46881200-46882000 | Enhancers | HepG2 | liver |