Variant report

Variant	rs8084822
Chromosome Location	chr18:9096036-9096037
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9090630..9098108-chr18:9101820..9106792,10	MCF-7	breast:
2	chr18:9074118..9075688-chr18:9095487..9097097,2	MCF-7	breast:
3	chr18:9095858..9098422-chr18:9138833..9140543,2	MCF-7	breast:
4	chr18:9094662..9097779-chr18:9135218..9140540,6	K562	blood:
5	chr18:9095340..9097424-chr18:9134663..9136718,2	K562	blood:
6	chr18:9092915..9099777-chr18:9099997..9106148,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266053	Chromatin interaction
ENSG00000178127	Chromatin interaction
ENSG00000101745	Chromatin interaction
ENSG00000265257	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10451358	0.91[CEU][hapmap]
rs1156044	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11660603	0.91[CEU][hapmap]
rs1443596	0.81[CHD][hapmap]
rs1785560	1.00[CEU][hapmap]
rs2028656	0.91[CEU][hapmap]
rs2377960	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4130178	0.91[CEU][hapmap]
rs4798770	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4798771	0.91[CEU][hapmap];0.81[AMR][1000 genomes]
rs4798785	0.91[CEU][hapmap]
rs4798789	0.91[CEU][hapmap]
rs4798790	0.91[CEU][hapmap]
rs6506640	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6506644	0.91[CEU][hapmap]
rs6506648	0.91[CEU][hapmap]
rs7229883	0.91[CEU][hapmap]
rs7231452	0.91[CEU][hapmap]
rs7235514	0.91[CEU][hapmap];0.81[CHD][hapmap]
rs8083078	0.91[CEU][hapmap]
rs8092135	0.91[CEU][hapmap]
rs8092613	0.91[CEU][hapmap]
rs8092878	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs874250	0.91[CEU][hapmap];0.81[CHD][hapmap]
rs906807	0.90[CEU][hapmap]
rs9652952	0.89[CEU][hapmap]
rs998171	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9083400-9097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr18:9091200-9096200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr18:9093600-9096200	Enhancers	Hela-S3	cervix
4	chr18:9093800-9096200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr18:9093800-9096200	Enhancers	Colon Smooth Muscle	Colon
6	chr18:9094400-9096200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:9094400-9096200	Enhancers	Primary T cells from cord blood	blood
8	chr18:9094600-9096200	Enhancers	Primary B cells from cord blood	blood
9	chr18:9094600-9101400	Weak transcription	Placenta	Placenta
10	chr18:9094800-9096200	Enhancers	Primary B cells from peripheral blood	blood
11	chr18:9095200-9096200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr18:9095200-9096200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr18:9095200-9096200	Flanking Active TSS	GM12878-XiMat	blood
14	chr18:9095200-9097200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:9095200-9097800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr18:9095400-9096200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr18:9095400-9098000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr18:9095400-9100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:9095400-9101600	Weak transcription	Fetal Lung	lung
20	chr18:9095600-9096200	Enhancers	Stomach Smooth Muscle	stomach
21	chr18:9095600-9096600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr18:9095600-9096800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr18:9095600-9097200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr18:9095600-9100600	Weak transcription	NHDF-Ad	bronchial
25	chr18:9095600-9101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:9095600-9101400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr18:9095600-9101800	Weak transcription	Psoas Muscle	Psoas
28	chr18:9095800-9096200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr18:9095800-9096200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr18:9095800-9096200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr18:9095800-9096200	Enhancers	HepG2	liver
32	chr18:9095800-9096200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr18:9095800-9096400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr18:9095800-9096400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr18:9095800-9096400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr18:9095800-9096800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr18:9095800-9096800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr18:9095800-9096800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:9095800-9096800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr18:9095800-9096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr18:9095800-9098400	Weak transcription	Fetal Stomach	stomach
42	chr18:9095800-9100800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr18:9095800-9101600	Weak transcription	Brain Hippocampus Middle	brain
44	chr18:9096000-9096200	Enhancers	Primary hematopoietic stem cells	blood
45	chr18:9096000-9096200	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr18:9096000-9096200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr18:9096000-9096200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr18:9096000-9096400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr18:9096000-9096400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr18:9096000-9096400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links