Variant report

Variant	rs8084914
Chromosome Location	chr18:40240732-40240733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12454144	0.82[AMR][1000 genomes]
rs12454146	0.82[AMR][1000 genomes]
rs12454214	0.82[AMR][1000 genomes]
rs12457128	0.81[AMR][1000 genomes]
rs1346889	0.84[AMR][1000 genomes]
rs1430908	0.82[AMR][1000 genomes]
rs1835497	0.82[AMR][1000 genomes]
rs2116101	0.82[AMR][1000 genomes]
rs4263023	0.82[AMR][1000 genomes]
rs58137875	0.81[AMR][1000 genomes]
rs714295	0.83[AMR][1000 genomes]
rs7234212	0.82[AMR][1000 genomes]
rs7242107	0.82[AMR][1000 genomes]
rs7359732	0.82[AMR][1000 genomes]
rs8084332	0.82[AMR][1000 genomes]
rs8085016	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9709512	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9916901	0.82[AMR][1000 genomes]
rs9949554	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40230200-40241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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