Variant report

Variant	rs8086322
Chromosome Location	chr18:8410424-8410425
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2000648	1.00[AMR][1000 genomes]
rs61356532	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1058445	chr18:8270681-8421249	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv909361	chr18:8364598-8446393	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8379000-8411000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:8379800-8410800	Weak transcription	Psoas Muscle	Psoas
3	chr18:8388400-8410800	Weak transcription	Brain Anterior Caudate	brain
4	chr18:8388600-8410600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr18:8391800-8410600	Weak transcription	A549	lung
6	chr18:8393800-8411200	Weak transcription	Fetal Kidney	kidney
7	chr18:8394600-8411600	Weak transcription	Placenta	Placenta
8	chr18:8400200-8410800	Weak transcription	Fetal Intestine Large	intestine
9	chr18:8404600-8411800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:8407200-8412000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:8407600-8411000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr18:8407800-8410600	Weak transcription	Colon Smooth Muscle	Colon
13	chr18:8407800-8411400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:8407800-8411400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr18:8408200-8410600	Weak transcription	Brain Hippocampus Middle	brain
16	chr18:8408400-8411200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr18:8408800-8412200	Weak transcription	Left Ventricle	heart
18	chr18:8409000-8411200	Weak transcription	Right Ventricle	heart
19	chr18:8409200-8412000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr18:8409800-8411800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr18:8409800-8412000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:8409800-8412000	Weak transcription	Aorta	Aorta
23	chr18:8409800-8412000	Weak transcription	Lung	lung
24	chr18:8410200-8411800	Weak transcription	Fetal Heart	heart
25	chr18:8410400-8410800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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