Variant report

Variant	rs8087765
Chromosome Location	chr18:40048990-40048991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55714507	0.87[AFR][1000 genomes]
rs73951547	0.87[AFR][1000 genomes]
rs73951589	0.87[AFR][1000 genomes]
rs9676086	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1055622	chr18:40040474-40057755	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv1056192	chr18:40040474-40058395	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv576736	chr18:40042007-40057525	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1059650	chr18:40044096-40057284	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1062292	chr18:40044096-40057755	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40048200-40049200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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