Variant report

Variant	rs8088187
Chromosome Location	chr18:39635747-39635748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:39634544..39636615-chr18:39639116..39640932,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11873469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11873602	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11874766	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11874775	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11874814	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11874830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11876547	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11876578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11877901	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1540057	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16975441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975447	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975466	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975521	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56411890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56751463	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56979511	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57208863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58298297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58390786	0.82[AFR][1000 genomes]
rs58881642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61095714	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6507453	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6507454	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6650669	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7229485	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7237185	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7237815	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7240066	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7241399	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7245131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7343027	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73448558	0.87[AMR][1000 genomes]
rs73451096	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452297	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73452300	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73454573	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454580	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454593	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73950814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8089142	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095945	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv431979	chr18:39255558-39696452	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv909566	chr18:39327962-39688452	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv34153	chr18:39398768-39872265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv909567	chr18:39470190-39652939	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv909568	chr18:39491873-39768746	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1057988	chr18:39618253-39713904	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv1065792	chr18:39619676-39711798	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
11	nsv1057790	chr18:39621947-39705550	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
12	esv2762006	chr18:39621947-39713916	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
13	nsv1063952	chr18:39621947-39718600	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	nsv1064973	chr18:39623604-39711798	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv833631	chr18:39633503-39824091	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39548400-39670000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:39572000-39654400	Weak transcription	Colonic Mucosa	Colon
3	chr18:39578400-39663200	Weak transcription	Fetal Heart	heart
4	chr18:39581000-39647400	Weak transcription	Spleen	Spleen
5	chr18:39581000-39666200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:39585000-39646000	Weak transcription	Pancreas	Pancrea
7	chr18:39585000-39658600	Weak transcription	Small Intestine	intestine
8	chr18:39586600-39647400	Weak transcription	Thymus	Thymus
9	chr18:39590600-39668000	Weak transcription	Esophagus	oesophagus
10	chr18:39594600-39638800	Weak transcription	K562	blood
11	chr18:39599000-39646000	Weak transcription	Psoas Muscle	Psoas
12	chr18:39601600-39668200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr18:39612200-39647400	Weak transcription	Aorta	Aorta
14	chr18:39612200-39666400	Weak transcription	Gastric	stomach
15	chr18:39612200-39669800	Weak transcription	Fetal Stomach	stomach
16	chr18:39612200-39670000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:39615000-39649600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr18:39615400-39663400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr18:39618000-39647400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr18:39619200-39656400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr18:39619400-39647600	Weak transcription	Brain Germinal Matrix	brain
22	chr18:39619600-39645600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr18:39619600-39647400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr18:39619800-39662200	Weak transcription	Right Ventricle	heart
25	chr18:39620200-39645800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr18:39620800-39664200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr18:39621200-39646200	Weak transcription	Lung	lung
28	chr18:39621200-39657200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr18:39621600-39644800	Weak transcription	Ovary	ovary
30	chr18:39621800-39644800	Weak transcription	Placenta	Placenta
31	chr18:39622200-39638400	Weak transcription	HSMMtube	muscle
32	chr18:39622200-39649400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr18:39628600-39666200	Weak transcription	A549	lung
34	chr18:39628800-39643800	Weak transcription	NHDF-Ad	bronchial
35	chr18:39629000-39649600	Weak transcription	NHLF	lung
36	chr18:39630000-39646000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr18:39630200-39638800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr18:39630600-39638400	Weak transcription	Dnd41	blood
39	chr18:39630600-39647400	Weak transcription	Colon Smooth Muscle	Colon
40	chr18:39630600-39658600	Weak transcription	Hela-S3	cervix
41	chr18:39630800-39643200	Weak transcription	Osteobl	bone
42	chr18:39630800-39646200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr18:39630800-39650200	Weak transcription	Fetal Kidney	kidney
44	chr18:39631000-39639000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr18:39631000-39639400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr18:39631000-39639800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr18:39631000-39647400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr18:39631200-39636600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr18:39631200-39637800	Weak transcription	Liver	Liver
50	chr18:39631200-39638000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links