Variant report

Variant	rs8089089
Chromosome Location	chr18:24639467-24639468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11877628	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8089089	PDE9A	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24637800-24644800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr18:24638000-24640400	Weak transcription	HepG2	liver
3	chr18:24638800-24639600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:24638800-24639800	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:24638800-24640000	Weak transcription	Psoas Muscle	Psoas
6	chr18:24638800-24640200	Weak transcription	Pancreas	Pancrea
7	chr18:24638800-24640400	Weak transcription	Left Ventricle	heart
8	chr18:24638800-24640400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr18:24639000-24640200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr18:24639400-24639600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr18:24639400-24640200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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