Variant report

Variant	rs8089696
Chromosome Location	chr18:12903976-12903977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:12882544..12885110-chr18:12903307..12905811,3	K562	blood:
2	chr18:12880723..12883598-chr18:12902234..12904693,2	K562	blood:
3	chr18:12701555..12704025-chr18:12902533..12905491,2	K562	blood:
4	chr18:12902756..12905734-chr18:12905891..12908920,3	K562	blood:

Variant related genes	Relation type
ENSG00000175354	Chromatin interaction
ENSG00000101624	Chromatin interaction
ENSG00000128789	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11080609	0.83[AFR][1000 genomes]
rs8089211	0.83[AFR][1000 genomes]
rs8092942	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	nsv1064844	chr18:12748045-12953235	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
5	nsv543656	chr18:12748045-12953235	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
6	nsv909407	chr18:12877060-12917703	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12902400-12904600	Enhancers	Fetal Thymus	thymus
2	chr18:12902400-12905000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:12902800-12904600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:12903400-12904000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:12903400-12904600	Enhancers	Dnd41	blood
6	chr18:12903600-12904600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr18:12903600-12904600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr18:12903800-12904000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr18:12903800-12904000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr18:12903800-12904000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:12903800-12904000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr18:12903800-12904000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr18:12903800-12904000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr18:12903800-12904200	Enhancers	Duodenum Mucosa	Duodenum
15	chr18:12903800-12904200	Enhancers	Left Ventricle	heart
16	chr18:12903800-12904400	Enhancers	Primary T cells from cord blood	blood
17	chr18:12903800-12904400	Enhancers	Fetal Stomach	stomach
18	chr18:12903800-12904400	Enhancers	Spleen	Spleen
19	chr18:12903800-12904600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr18:12903800-12904600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr18:12903800-12904600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr18:12903800-12904600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr18:12903800-12904600	Enhancers	Ovary	ovary
24	chr18:12903800-12904600	Flanking Active TSS	K562	blood
25	chr18:12903800-12904800	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links