Variant report

Variant	rs8096677
Chromosome Location	chr18:29290722-29290723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55705955	1.00[AMR][1000 genomes]
rs9957597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9964690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29290200-29291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr18:29290400-29290800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr18:29290400-29291000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:29290400-29291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr18:29290400-29291000	Enhancers	Aorta	Aorta
6	chr18:29290400-29291200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:29290400-29291200	Enhancers	Esophagus	oesophagus
8	chr18:29290400-29292000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr18:29290400-29292200	Enhancers	K562	blood
10	chr18:29290600-29291000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr18:29290600-29298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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